Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g07171 ATGATTTTGAGTGCTAGACATGTATGTAGCAAAGAAGGTTTTCCTAAGCTGGACAAAAGAGATAGCGTATCAACTAACCATCGACATCAAACAAGAACCGAATGTCCTATAAAGATGGGAATCAAATACAAGAAAGAGATTGGGAAGTATCAAATTCATGATTTTGTTGATAAGCGTAACCATCCTTTGCACCTTCCTGAGACGACTCACATGCTTATATCTCAGCAAAAATTATCTGAAGTTCAAGCTCATGAAATTGATTTGGCAGATGATTCAGGCATTAAGCAAAGGGCCCTATTTGAGCTAATGAGTAAGCAAGATGGTGGCAAAGAAAACCTTGGTTACACATATTTGGATCAAAAGAATTATCTTCGTAGCAAAAGATTGAGAAATATGGCACACGGGGAGGCTGGAAGCTTATTACAACACTTTCAACAAAAATCTATAGAAAACCCATCGTTCTATCACAGAGTCCAATTAAATGTTGAAGAACAAATAACAAATATTTTTTGGGAAATGCACGAATAA 528 0.3617 MILSARHVCSKEGFPKLDKRDSVSTNHRHQTRTECPIKMGIKYKKEIGKYQIHDFVDKRNHPLHLPETTHMLISQQKLSEVQAHEIDLADDSGIKQRALFELMSKQDGGKENLGYTYLDQKNYLRSKRLRNMAHGEAGSLLQHFQQKSIENPSFYHRVQLNVEEQITNIFWEMHE. 176
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g07171 175 Pfam FAR1 DNA-binding domain 2 63 IPR004330 -
Seca4g07171 175 PANTHER OS01G0519700 PROTEIN 5 172 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g07171 Seca-Chr4 159521019 159521546 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Seca4g07171 FAR1 1.5e-10 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g07171 - - tpra:123886525 276.559