Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g07143 ATGGAGAAAATTATAAGAGCTGCCTATGCTATAGCAAAGAGTTGTGTGGGGATGGATTCGATAGGTGTGATGAGGACAGAGCTGGTGAAGTCTACCTTCAATGTTGTTATGGTTGGAGTTTTGGGTATTTATGGCCTTATTATTGTTGTCATGATCAGTACTGGTATTAACCCCAAGGCCAAATATTATTACTTCTTTGATGGTTATGACCATGTCTCCTATGGTCTTACCTGCATGCTGGCTGGCCTCTCTATTGGCATGGCTATTGGTATTGTTGGTGATGTTGGTGTTAGGTATAATTGTTCTGCCTTAGTATTTGATCTATGA 327 0.4037 MEKIIRAAYAIAKSCVGMDSIGVMRTELVKSTFNVVMVGVLGIYGLIIVVMISTGINPKAKYYYFFDGYDHVSYGLTCMLAGLSIGMAIGIVGDVGVRYNCSALVFDL. 109
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g07143 108 Gene3D - 2 103 IPR035921 -
Seca4g07143 108 PRINTS Vacuolar ATP synthase 16kDa subunit signature 7 31 IPR000245 GO:0033179|GO:0046961|GO:1902600
Seca4g07143 108 PRINTS Vacuolar ATP synthase 16kDa subunit signature 83 108 IPR000245 GO:0033179|GO:0046961|GO:1902600
Seca4g07143 108 PANTHER V-TYPE PROTON ATPASE PROTEOLIPID SUBUNIT 4 101 - -
Seca4g07143 108 NCBIfam V-type ATPase subunit C 5 97 IPR011555 GO:0033179|GO:0046961|GO:1902600
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g07143 Seca-Chr4 158690100 158690426 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g07143 7 102 Primary Pumps ATPases(2) AT4G38920 73.196 1.03e-41 132
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g07143 K02155 - csin:114292490 131.724