Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g07102 ATGGATGATGATAGCATTGATTTAATTGCATCAACAAAAGGCTTAAATGATCCAGTTGATACGTCGGAGGAATGGGTTCCTAAGTGTAATGAAGACATCAAACCTGTAGTTGGCAGAGTCTTTGATACTTTAGAACAACGAGGAGACTCTTATCACAGGTATGCACATATTGTTGGTTTTAGTGTGCGCAAAGCAACTGAAACGAAAGATAAAAATGGAGAAACAAAGTGGAAATATTTTCTTTGCTCTAACGAAGGCTTCAAATTAGAGAAAAAAGAGGTTGTAACCGAGTTGTTTGTTGATGATAAAAATTTGCCTAAAACCAGACAAAGAAAACTAACAAAGGAAGGATATAATACAAGGATTGTTTTTAATAAGAGGACACAAGAAGGAAATTACAATATCAACATGATTTAA 417 0.3405 MDDDSIDLIASTKGLNDPVDTSEEWVPKCNEDIKPVVGRVFDTLEQRGDSYHRYAHIVGFSVRKATETKDKNGETKWKYFLCSNEGFKLEKKEVVTELFVDDKNLPKTRQRKLTKEGYNTRIVFNKRTQEGNYNINMI. 139
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g07102 138 Pfam FAR1 DNA-binding domain 51 136 IPR004330 -
Seca4g07102 138 PANTHER FAR-RED IMPAIRED RESPONSIVE (FAR1) FAMILY PROTEIN-RELATED 28 127 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g07102 Seca-Chr4 157445014 157445430 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Seca4g07102 FAR1 5.9e-10 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g07102 - K17604 mtr:120577464 140.969