Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g07097 ATGAGGAAACCTGATCTGATGGGAAAAGACAGCAACAACATTAAGAGCAAGTTAAGGAAAGGGTTGTGGTCACCTGAGGAAGATGAGAAGCTGATTAGGTACATGATAACTAAAGGGCAAGGCTGCTGGAGTGACATTGCTAAGAATGCTGGTCTCCAAAGGTGTGGTAAAAGCTGCCGTCTTCGTTGGATTAATTACTTGAGACCTGATCTCAAACGTGGTGCATTCTCACCCCAAGAGGAAGACCTCATCATTCATTTGCACTCCATTCTTGGCAACAGATGGTCTCAGATAGCAGCACGTCTCCCTGGTCGCACAGACAATGAGATAAAGAATTTCTGGAACTCCACACTGAAGAAAAGATTGAAAATTAACAACTCGACCCCATCACCAAACAACAGCGACTCATCAGAAGCTAGAGATGTATTGGGTGGGAATATGATGGCCATTAATGAACATGATCAACTCATGACAATGTGCATGGATTCCTCTTCAAATTCATCAACCTCATCATCATCCATGGTTTTAGCTGAACCCTTTAGCTTCTTGTCCAATCGCTTTGACATGACCGGTTTTCCTGACATGCCTGCATGCTTAACCCATAGTGATTATGGAAATGGGATAATATTGGAGCCTAATAAAATTGGGTTAGAAAGCGACATTTCCCTTCCTCCGCTAGAAACTAGAAGCATCGAAGACAATAGTAACCCAATTCATGATGTGAAGAGCCATAACAACCACTTCAATAATAGTTGCTTCTATAACACTCATCAGATTCAGGGCTCCAACTTAGACGACTTGTTTGGCTTTGGAAATCATGCCCAAGGGGAAAACTTAAGAATGGGAGAATGGGACTTGGAGGGTTTGATGCAAGACATATCCTCTTTTCCTTCCCTTGATTTCCAAGTTTGA 912 0.4254 MRKPDLMGKDSNNIKSKLRKGLWSPEEDEKLIRYMITKGQGCWSDIAKNAGLQRCGKSCRLRWINYLRPDLKRGAFSPQEEDLIIHLHSILGNRWSQIAARLPGRTDNEIKNFWNSTLKKRLKINNSTPSPNNSDSSEARDVLGGNMMAINEHDQLMTMCMDSSSNSSTSSSSMVLAEPFSFLSNRFDMTGFPDMPACLTHSDYGNGIILEPNKIGLESDISLPPLETRSIEDNSNPIHDVKSHNNHFNNSCFYNTHQIQGSNLDDLFGFGNHAQGENLRMGEWDLEGLMQDISSFPSLDFQV. 304
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g07097 303 ProSiteProfiles Myb-like domain profile. 15 67 IPR001005 -
Seca4g07097 303 SUPERFAMILY Homeodomain-like 18 114 IPR009057 -
Seca4g07097 303 Pfam Myb-like DNA-binding domain 20 67 IPR001005 -
Seca4g07097 303 Pfam Myb-like DNA-binding domain 73 117 IPR001005 -
Seca4g07097 303 FunFam MYB transcription factor 17 73 - -
Seca4g07097 303 SMART sant 19 69 IPR001005 -
Seca4g07097 303 SMART sant 72 120 IPR001005 -
Seca4g07097 303 PANTHER MYB DOMAIN PROTEIN 55 7 254 - -
Seca4g07097 303 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 68 122 IPR017930 -
Seca4g07097 303 Gene3D - 17 73 - -
Seca4g07097 303 Gene3D - 74 143 - -
Seca4g07097 303 FunFam Transcription factor MYB46 74 142 - -
Seca4g07097 303 CDD SANT 75 118 IPR001005 -
Seca4g07097 303 ProSiteProfiles Myb-like domain profile. 68 118 IPR001005 -
Seca4g07097 303 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 15 67 IPR017930 -
Seca4g07097 303 CDD SANT 23 67 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g07097 Seca-Chr4 156946266 156948557 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g07097 1 303 MYB Transcription Factor Family AT3G08500 49.280 6.10e-83 252
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Seca4g07097 Myb_DNA-binding 2e-13 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g07097 K09422 - gmx:100796379 440.654