Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g07084 ATGTGCGGCGGTCCTGAGAAATCAAAATCTCCTTCAACTTCATCTTCATCTGCAATCGAAGGTTCAGCTAGCGTCAAAGATATGAATAATCTAACTGTTCATACTGAAGATTCTTTTTCCAGTATACTTGAACTTGCTTCTAACAATGATTTTGAAGATTTTAAGCTAACTATAGACAGGGATGCTTCTCTAATAAATGAAGTTGGCGCCTGGTATGTCCGCCAAAATGGATCCAAACAAATTGTTCTGGAGCATAGAACTCCTTTAATGGTTGCTGCTACTTATGGGAGTATTGATGTTTTAAAGCTTGTACTCTCATGTCCGGAGGCTGGTGTAAATTTCTCCTGTGGGACTGATAAAAGCACTGCCCTTCATTGTGCTGCTTCAGGTGGTGCTGTTAATGCAGTTGATGTTGTGAAGCTGCTTTTATCAGCTGGCGCTGATATCAGTTGTGTCGATGCTAATGGAAATCGTCCTGTTGATGTTATTGTTGTTCCTCCTAAGCTCCAAGGTATGAAAACAATGCTTGAAGAATTTCTCTCAGATTGTGCTTCTGATGGGTCTGTTGATGACTGCTCCCTTCCAGTTTCGGCACTTGATAATGGGTTGCCATCCTCTCCTGTGGCCTCAAAGTGTACTGACACAGCTGTCAATCCTGCATCAGACAAGAAAGAATATCCAATTGATCCGTCACTTCCTGATATAAAAAACAGCATATATTCAACAGATGAGTTTCGGATGTTTTCATTCAAGGTCCGTCCTTGTTCCCGTGCATACTCTCATGATTGGACTGAATGTCCTTTTGTTCATCCTGGGGAGAATGCTCGTAGGAGAGATCCCAGAAAGTTCCATTACAGCTGTGTGCCATGCCCTGAATTTAGAAAAGGGGCTTGTAGACGTGGAGATATGTGTGAATATGCTCATGGAGTATTTGAGTGCTGGCTACACCCAGCTCAGTATCGGACAAGGCTCTGCAAAGATGGTACTAGTTGCAATAGAAGGGTATGTTTTTTTGCTCACACAGCTGAAGAGCTGCGTCCGCTGTATGTATCCACTCGATCATCTGCTGCTGCTCCCAATGTCATGGACATGGCTGCTGCAATGAGTCTTTTTCCTGGTTCGCCTTCATCAATCTCTTCCATGTCTCCATCTCCTTTTGCACAGCCAATATCTCCATCTGCATTTGCTCAGCGTGAGAAACAGCAGCAACAGCTGCGGAGCCTTAGTTCAAGGGATCTTGGTGCTAACAGTCTTGTGTCCGTTGTTGGGTCCCCTATTAACTCCTGGTCTAAGTGGGGATCTCCTAATGGAAAAGTTGATTGGTCAGTAAATGGAAATGAGCTAGGTCGATTGCAAAGGTCATCCTCATTTGAGCTTGGAAACAAAGGGGAAGAGCCTGATCTATCCTGGGTCCAGTCTCTTGTCAAGGAATCCCCACCTGAAATAAAAGAGAAATTTGCAGGTTCTGGCCCTATTGCATCTGCTGATGGACTGAATTCCAATCCTCAAATAGAGTCTACTGATCATTCTGTTTTAGGAGCCTGGCTTGAGCAAATGCAGTTGGATCAGCTTGTAGTCTAG 1581 0.4402 MCGGPEKSKSPSTSSSSAIEGSASVKDMNNLTVHTEDSFSSILELASNNDFEDFKLTIDRDASLINEVGAWYVRQNGSKQIVLEHRTPLMVAATYGSIDVLKLVLSCPEAGVNFSCGTDKSTALHCAASGGAVNAVDVVKLLLSAGADISCVDANGNRPVDVIVVPPKLQGMKTMLEEFLSDCASDGSVDDCSLPVSALDNGLPSSPVASKCTDTAVNPASDKKEYPIDPSLPDIKNSIYSTDEFRMFSFKVRPCSRAYSHDWTECPFVHPGENARRRDPRKFHYSCVPCPEFRKGACRRGDMCEYAHGVFECWLHPAQYRTRLCKDGTSCNRRVCFFAHTAEELRPLYVSTRSSAAAPNVMDMAAAMSLFPGSPSSISSMSPSPFAQPISPSAFAQREKQQQQLRSLSSRDLGANSLVSVVGSPINSWSKWGSPNGKVDWSVNGNELGRLQRSSSFELGNKGEEPDLSWVQSLVKESPPEIKEKFAGSGPIASADGLNSNPQIESTDHSVLGAWLEQMQLDQLVV. 527
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g07084 526 PANTHER UNKEMPT FAMILY MEMBER 44 478 IPR045234 -
Seca4g07084 526 FunFam Zinc finger CCCH domain-containing protein 66 242 310 - -
Seca4g07084 526 ProSiteProfiles Zinc finger C3H1-type profile. 289 311 IPR000571 GO:0046872
Seca4g07084 526 SMART c3hfinal6 284 310 IPR000571 GO:0046872
Seca4g07084 526 SMART c3hfinal6 319 342 IPR000571 GO:0046872
Seca4g07084 526 MobiDBLite consensus disorder prediction 380 401 - -
Seca4g07084 526 MobiDBLite consensus disorder prediction 1 21 - -
Seca4g07084 526 Pfam CCCH-type zinc finger 289 309 IPR041367 -
Seca4g07084 526 ProSiteProfiles Ankyrin repeat region circular profile. 119 153 - -
Seca4g07084 526 SMART ANK_2a 84 114 IPR002110 GO:0005515
Seca4g07084 526 SMART ANK_2a 119 151 IPR002110 GO:0005515
Seca4g07084 526 MobiDBLite consensus disorder prediction 7 21 - -
Seca4g07084 526 Gene3D - 285 347 - -
Seca4g07084 526 SUPERFAMILY Ankyrin repeat 31 175 IPR036770 -
Seca4g07084 526 Pfam Ankyrin repeats (3 copies) 76 151 IPR002110 GO:0005515
Seca4g07084 526 PRINTS Ankyrin repeat signature 85 100 IPR002110 GO:0005515
Seca4g07084 526 PRINTS Ankyrin repeat signature 138 152 IPR002110 GO:0005515
Seca4g07084 526 ProSiteProfiles Ankyrin repeat profile. 119 154 IPR002110 GO:0005515
Seca4g07084 526 Gene3D - 24 199 IPR036770 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g07084 Seca-Chr4 152862284 152864432 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g07084 387 523 C2H2 Transcription Factor Family AT5G12850 40.816 2.56e-18 86.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Seca4g07084 Ank_2 1.7e-09 CL0465
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g07084 - - gmx:100792574 664.455