Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g07059 ATGTACGATGAACTCAGTTCACTCCATGTGTTTCTGCATATGTTGTTGTTGGCTGCATTTCTTTTTGGACATAGTTCATTCATTTCTCATCTTATGCTTGTGCAGGCCTCCAGAAATTATGCCAATATACCGGGGCAAAAGGAAGACAAAGTTAAGGTCCCTCTGGCTATGTTTGGAGGTTCAGGAAACTATGCCTCTGCTTTGTATATTGCAGCAGTGAAAGCTAATGCAGTGGAAACGGTTGAGTCTGAGATTCTTGAATTTGTTGAGGCGGTAAAAAATAGTGCTATAACTTCACAGTTTATAAAGGACTTATCTGTCGCTAAGGATATTAGAGTAAAGGCCATCCAAGAGATTTGTGGTGAAGCGAAATTTTCAGATGTTACAAAGAACTTCCTTGTTATTGTTGCCGAGAACGGGAGGCTTAAAAACATAGACACCATTGCAAAGAGGTTTGTGGAGTTGGCAATGGCATATAAGGGAGAAGTGAAAGCAACTGTGACCACTGTCTTTCCCCTTCCCCCTGAAGAGGAGAAGGCACTGAAGGAGACTCTTCAGGAAATCATAGGTTCGGGGGTAAAGGTTAAGCTCGAACAGAAGATTGATCCAAACATACTTGGTGGTCTAGTGTTGGAATTTAGCCAGAAGGTCTTTGACATGTCTATCAAGACTAGGGCACAGCAGATGGAGAGGATCCTCCGAGAGCCCATAAATATCTCCAATATCTGA 729 0.4239 MYDELSSLHVFLHMLLLAAFLFGHSSFISHLMLVQASRNYANIPGQKEDKVKVPLAMFGGSGNYASALYIAAVKANAVETVESEILEFVEAVKNSAITSQFIKDLSVAKDIRVKAIQEICGEAKFSDVTKNFLVIVAENGRLKNIDTIAKRFVELAMAYKGEVKATVTTVFPLPPEEEKALKETLQEIIGSGVKVKLEQKIDPNILGGLVLEFSQKVFDMSIKTRAQQMERILREPINISNI. 243
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g07059 242 Hamap ATP synthase subunit delta [atpD]. 56 235 IPR000711 GO:0015986|GO:0046933
Seca4g07059 242 Gene3D - 60 153 IPR026015 -
Seca4g07059 242 PANTHER ATP SYNTHASE DELTA CHAIN 35 235 IPR000711 GO:0015986|GO:0046933
Seca4g07059 242 NCBIfam ATP synthase F1 subunit delta 63 233 IPR000711 GO:0015986|GO:0046933
Seca4g07059 242 ProSitePatterns ATP synthase delta (OSCP) subunit signature. 195 214 IPR020781 GO:0015986|GO:0016020|GO:0046933
Seca4g07059 242 PRINTS ATP synthase delta subunit signature 130 141 IPR000711 GO:0015986|GO:0046933
Seca4g07059 242 PRINTS ATP synthase delta subunit signature 208 226 IPR000711 GO:0015986|GO:0046933
Seca4g07059 242 PRINTS ATP synthase delta subunit signature 193 208 IPR000711 GO:0015986|GO:0046933
Seca4g07059 242 PRINTS ATP synthase delta subunit signature 60 79 IPR000711 GO:0015986|GO:0046933
Seca4g07059 242 PRINTS ATP synthase delta subunit signature 141 155 IPR000711 GO:0015986|GO:0046933
Seca4g07059 242 Pfam ATP synthase delta (OSCP) subunit 62 233 IPR000711 GO:0015986|GO:0046933
Seca4g07059 242 SUPERFAMILY N-terminal domain of the delta subunit of the F1F0-ATP synthase 61 161 IPR026015 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g07059 Seca-Chr4 150717965 150729361 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g07059 76 242 Primary Pumps ATPases AT5G13450 53.488 3.97e-63 194
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g07059 K02137 - gmx:100790990 348.206