Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g07054 ATGAATTGTCTTAGGGTTTGCAAGTTCTACGCCCGTGGAGTATGTTTGAAAGGGGAGCAATGTGATTTTTCTCATCAGAGAAAGGATCCTTCAGTTGATATATGCACGTATTATCAAAAGGGATTTTGTGCTTATGGTAGTCGATGCAGATATAAGCATGTCAGAGCTTCTCAAGCATCATCTTCGGCAGATGGATGCCAATCTCTGGTTTCTGATTCTGCTGTGGCTCATACTACCAAAAGAACATCAAGTTGGGTTCCAAAGGCTACAAAGTTGTCTTCATCTGACAAGAATCATCTAAACTCTATGGGGAATGGTGATGTTGGTGAATCCAGTACTAGTAGCGCTGTACCATCTGAACATTTATTCTGTACATTTGCTGCTGCCAACTGCCCCTTAGGAGATAAATGTTCTCTAGTACATGGAAATCAATGTTTATACTGTAGAAAATATTGCTTGCATCCTACTGATCAAAAGGATAAAGAAAATCATTTGAGGACATGTGAGAAAAAGGAAAAATACCTTCAGGCTTTGAGAGGTAGTCAAGAAATAGAATGCAATGTTTGTCTGGAGCGTGTTCTTTCCAAACCCAAGCCATCTGAATGTAAGTTTGGGCTGCTTCCAGAATGTGATCATGCTTTCTGTTTATCCTGTATCCGCAATTGGCGTAATAGTGCCCCAGCCTCTGGAATGGACATCAATAATAATGCTAATACAGTGAGAACCTGCCCTGTTTGCCGGAAACTATCTTATTTTGTCATTCCAAGTGGTATTTGGTATTCTACAAAGGAGGAAAAACAGGAAATTATTGACAACTACAAGGCAAACTGCAAATTGATTGATTGCAAGCATTTTAACTTCGGAAATGGGAATTGTCCATTTGGGACTAGTTGTTTCTACAAGCATACAGTAAAGCCTGGCTCATACACATGGATACATAATAGGCCACCACCTCAACATAGACCAAACAATTTTGATATGTATGACATGTTGGATATGCTCAGCGAAGTTGATTTATCAAGTGGAGAATTTTATTCCATCATGAGGGACTCAGAATTTTTTGAAGATATGGATCCATTTGAGATGATGACTATATCAGATACCCTGGCTAGTGGATCAGGGCCTTGTTTGGGTCCTTTTGATTCTGATGATGAGGAGGACATGGATATTTTTCAGATGGCTGCTTTGTCAGAGGCACTGGTTTCAGATTTTCACGATGAAGAATTGAATCCTATGGAGGCGGCTTTGTTATCGATGATGATGCGTTCTAATATGGAAGAAGGAGCATGTCTGAAAGGGGAGCATTGTGAATTTTCTCATGACTGGAAAGATCCTCCAAATAATATATGTACATTTTATCAGAAAGGTGTCTGTGCTTATGGTAGTCACTGCAGATATGATCATGTCAAAGCTTCTCGAGCACAGCCCTCCTCTCCATCTTCTTCAGTTATCGCACACCAGCCCCTTGTTTCAGATTCTGCTGTTTTTGGTAATACTAGAATTAAATCAAACGATGTTGTTACAGGTGCAGAGTTTTCTCTTTCCCACAGTCCTCACCTTCTTCCCAGTAAACCAGCCTGGAATCAAGAATCTGAGAATCATGATTTTTTAGGGGAAGATAATGTTAGTCAATCCATAATTACTTCACCTGCTGAGCTTTCAATTTGTTCATTTGCTGCTGCTGGCAATTGTCCAAGAGGGGAAAAATGTCCTCATATTCATGGGGATCTATGTCCCACCTGTGGAAAGCATTGCTTGCATCCTTTCCGACCCGAGGAAAGAGAAGAACATACGAAGAATTGTGAAAATAAACAAAAGCATCTCGAGGCATTGAAACAAAGTCAAGAAATTGAATGCTGTGTTTGCCTAGAACGTGTTCTTTCAAAGCCTACTGCAGCTGAACGTAAGTTTGGGCTGTTATCTGAATGTGATCATCCATTCTGCATATCCTGTATAAGGAATTGGCGTAGCAGTAACCCAACATTAGGGATGGATGTTAATAGCACATTGAGGGCTTGTCCTATCTGTCGCAAGTTATCTTACTTTGTCATTCCAAGTGTTATTTGGTACTCTACAAGTGAAGAAAAACAGGAAATCATTGATACTTACAAGGCAAAGCTCAAGTCAATTGACTGCAAGCATTTTGACTTTGGGGATGGGAACTGCCCTTTTGGAACTAGTTGTTTCTACAAGGTAAATACTTGA 2205 0.4009 MNCLRVCKFYARGVCLKGEQCDFSHQRKDPSVDICTYYQKGFCAYGSRCRYKHVRASQASSSADGCQSLVSDSAVAHTTKRTSSWVPKATKLSSSDKNHLNSMGNGDVGESSTSSAVPSEHLFCTFAAANCPLGDKCSLVHGNQCLYCRKYCLHPTDQKDKENHLRTCEKKEKYLQALRGSQEIECNVCLERVLSKPKPSECKFGLLPECDHAFCLSCIRNWRNSAPASGMDINNNANTVRTCPVCRKLSYFVIPSGIWYSTKEEKQEIIDNYKANCKLIDCKHFNFGNGNCPFGTSCFYKHTVKPGSYTWIHNRPPPQHRPNNFDMYDMLDMLSEVDLSSGEFYSIMRDSEFFEDMDPFEMMTISDTLASGSGPCLGPFDSDDEEDMDIFQMAALSEALVSDFHDEELNPMEAALLSMMMRSNMEEGACLKGEHCEFSHDWKDPPNNICTFYQKGVCAYGSHCRYDHVKASRAQPSSPSSSVIAHQPLVSDSAVFGNTRIKSNDVVTGAEFSLSHSPHLLPSKPAWNQESENHDFLGEDNVSQSIITSPAELSICSFAAAGNCPRGEKCPHIHGDLCPTCGKHCLHPFRPEEREEHTKNCENKQKHLEALKQSQEIECCVCLERVLSKPTAAERKFGLLSECDHPFCISCIRNWRSSNPTLGMDVNSTLRACPICRKLSYFVIPSVIWYSTSEEKQEIIDTYKAKLKSIDCKHFDFGDGNCPFGTSCFYKVNT. 735
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g07054 734 CDD RING-HC_MKRN 617 677 - -
Seca4g07054 734 CDD RING-HC_MKRN 184 247 - -
Seca4g07054 734 ProSiteProfiles Zinc finger RING-type profile. 186 247 IPR001841 -
Seca4g07054 734 ProSiteProfiles Zinc finger C3H1-type profile. 276 305 IPR000571 GO:0046872
Seca4g07054 734 SUPERFAMILY CCCH zinc finger 447 468 IPR036855 GO:0046872
Seca4g07054 734 ProSiteProfiles Zinc finger C3H1-type profile. 550 577 IPR000571 GO:0046872
Seca4g07054 734 Gene3D - 422 482 - -
Seca4g07054 734 Gene3D - 3 67 - -
Seca4g07054 734 ProSiteProfiles Zinc finger C3H1-type profile. 1 28 IPR000571 GO:0046872
Seca4g07054 734 ProSiteProfiles Zinc finger RING-type profile. 619 677 IPR001841 -
Seca4g07054 734 SUPERFAMILY CCCH zinc finger 31 53 IPR036855 GO:0046872
Seca4g07054 734 ProSitePatterns Zinc finger RING-type signature. 210 219 IPR017907 -
Seca4g07054 734 ProSiteProfiles Zinc finger C3H1-type profile. 29 56 IPR000571 GO:0046872
Seca4g07054 734 SMART c3hfinal6 445 470 IPR000571 GO:0046872
Seca4g07054 734 SMART c3hfinal6 2 27 IPR000571 GO:0046872
Seca4g07054 734 SMART c3hfinal6 119 143 IPR000571 GO:0046872
Seca4g07054 734 SMART c3hfinal6 422 442 IPR000571 GO:0046872
Seca4g07054 734 SMART c3hfinal6 551 576 IPR000571 GO:0046872
Seca4g07054 734 SMART c3hfinal6 276 304 IPR000571 GO:0046872
Seca4g07054 734 SMART c3hfinal6 706 734 IPR000571 GO:0046872
Seca4g07054 734 SMART c3hfinal6 29 55 IPR000571 GO:0046872
Seca4g07054 734 ProSitePatterns Zinc finger RING-type signature. 643 652 IPR017907 -
Seca4g07054 734 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 594 710 IPR013083 -
Seca4g07054 734 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 161 279 IPR013083 -
Seca4g07054 734 MobiDBLite consensus disorder prediction 86 113 - -
Seca4g07054 734 ProSiteProfiles Zinc finger C3H1-type profile. 706 731 IPR000571 GO:0046872
Seca4g07054 734 SUPERFAMILY RING/U-box 176 253 - -
Seca4g07054 734 SMART ring_2 619 676 IPR001841 -
Seca4g07054 734 SMART ring_2 186 246 IPR001841 -
Seca4g07054 734 SUPERFAMILY CCCH zinc finger 5 26 IPR036855 GO:0046872
Seca4g07054 734 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 32 54 IPR000571 GO:0046872
Seca4g07054 734 Coils Coil 594 614 - -
Seca4g07054 734 Pfam RNA-binding, Nab2-type zinc finger 7 25 - -
Seca4g07054 734 Pfam RNA-binding, Nab2-type zinc finger 555 574 - -
Seca4g07054 734 Pfam RNA-binding, Nab2-type zinc finger 711 731 - -
Seca4g07054 734 Pfam RNA-binding, Nab2-type zinc finger 281 302 - -
Seca4g07054 734 Pfam Zinc finger, C3HC4 type (RING finger) 186 246 IPR018957 GO:0046872
Seca4g07054 734 Pfam Zinc finger, C3HC4 type (RING finger) 619 676 IPR018957 GO:0046872
Seca4g07054 734 PANTHER MAKORIN-RELATED 427 731 IPR045072 GO:0000209|GO:0061630
Seca4g07054 734 SUPERFAMILY RING/U-box 607 683 - -
Seca4g07054 734 Pfam CCCH-type zinc finger 449 468 IPR041367 -
Seca4g07054 734 ProSiteProfiles Zinc finger C3H1-type profile. 444 471 IPR000571 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g07054 Seca-Chr4 149774295 149787962 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Seca4g07054 zf-C3HC4 8.1e-07 CL0229
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g07054 K15687 - gmx:100788886 708.753
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca4g07054 4 149774295 149787962 Seca4g07054 4 149774295 149787962 ECH