Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g07049 ATGGATTCACGTATTGGGCATCCACAACCACAACTACACTGTCAGCAGCATAATTCTGGACTAATGAGGTACCGTTCTGCTCCAAGCTCATTGCTGGCAAGCCTTGTTGACAACAACATTAATGAGGAAGGTTTCACAAATTTTCCATCCACAAGTTCAGAAATGTTGATATGGTGGAGCAATTCGGAAGAGTATGGATATGGAGGCAAGCCTGTGAAGCAGGAAGCAGGGGAATCGGGTACACAACAACAACAGAGCGGTTATTCTTATGGTGGATCTCAGTTAATTTACCAATCACAACAAATTCAATGCTTGCCAAATGCTTTTTATACTTCTTCTATGGCTTCACAAAACTCCACTCAATCTAAAATGGGTATCAGGAATTGCTCCAATCTCATTAGGCAAAAGAGTTCCCCTGCTGGTTTTTTCTCCAATGAAAATGCATTGAGAGGGGTAGGAAGCTTTAAAGCCGGTGATGTCTCAAATGGACAGGCTACTGGCACTGCATCATCTAGGCCATCCTCGTGCATGAAATGGATGCCCCAAATAGCTGAAAATGGAAACGAAAGCCTAGAAGCAAACAGAAACCTGGTCAATGACAATAGTAGCTCCAAATGTTACATGCCAATGCCATGCTTCACCAGTGAATTCTGGGAGAGTAGTAGTACTGCCCAAAAAACAGAAAGTGAAGATGAAATCATGTTTTCTGCTTCAAATGGTTTGGAATCTCAGGAAGCAGATTTTTCCTATCAAAATCCTGATTTGACTCGCCATTTGAGTCTGCCCAGCTCTTCTACTAAAATGGCATCCGTAGAGAAGTTCCTTCAAATTCAAGGATCTGTTCCTTGTAAAATTCGAGCAAAAAGAGGCTTTGCCACTCATCCAAGAAGCATTGCAGAGAGGGTGAGAAGAACACGGATTAGTGAAAGAATCAAGAAACTGCAAGGTCTTTTCCCAAAATCAGACAAGCAAACAAGCACAGCAGATATGTTGGATTTGGCAGTTGAGTACATTAAAGATCTGCAGGAACAAGTTAAGATACTCATAGATTGCAGGGAAAAATGCAAATGTACAAGTAATGAAAAGCAACACTCTAGACCTTGTACCTGA 1110 0.4162 MDSRIGHPQPQLHCQQHNSGLMRYRSAPSSLLASLVDNNINEEGFTNFPSTSSEMLIWWSNSEEYGYGGKPVKQEAGESGTQQQQSGYSYGGSQLIYQSQQIQCLPNAFYTSSMASQNSTQSKMGIRNCSNLIRQKSSPAGFFSNENALRGVGSFKAGDVSNGQATGTASSRPSSCMKWMPQIAENGNESLEANRNLVNDNSSSKCYMPMPCFTSEFWESSSTAQKTESEDEIMFSASNGLESQEADFSYQNPDLTRHLSLPSSSTKMASVEKFLQIQGSVPCKIRAKRGFATHPRSIAERVRRTRISERIKKLQGLFPKSDKQTSTADMLDLAVEYIKDLQEQVKILIDCREKCKCTSNEKQHSRPCT. 370
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g07049 369 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 291 341 IPR011598 GO:0046983
Seca4g07049 369 CDD bHLH_AtbHLH_like 296 348 IPR045239 -
Seca4g07049 369 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 25 363 - -
Seca4g07049 369 SMART finulus 297 347 IPR011598 GO:0046983
Seca4g07049 369 FunFam Transcription factor bHLH130 family 292 361 - -
Seca4g07049 369 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 294 357 IPR036638 GO:0046983
Seca4g07049 369 Gene3D - 293 365 IPR036638 GO:0046983
Seca4g07049 369 Pfam Helix-loop-helix DNA-binding domain 297 342 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g07049 Seca-Chr4 149612909 149616257 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g07049 19 354 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G42280 38.482 2.86e-50 170
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Seca4g07049 HLH 3.9e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g07049 - - gmx:100812802 470.7
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca4g07049 4 149612909 149616257 Seca4g09928 4 232193610 232196943 ECH
Seca4g07049 4 149612909 149616257 Seca4g07049 4 149612909 149616257 ECH