Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g07046 ATGGTTCGCTCCAATGGCGTCAGGTTCATCCGATCTCTGCCCGCAAAACTCCTCCATGACGCCAACAAATCCATATATGAAGGAGTGTTCCAAAGAGGTTATAGGACATTAAATTCAGGACTTTGTAATTCTTCCAGAGTTATCGGAAGTTTTTCGTCAAATGTTGGAGATGGTGTTAATTTGAAAAACTGGATGCCACTGGGAGCAGCAAAGACATATTGGGGAGCATCTAGGTCGATACATGGCTCGGCATCTTTGGCAAGAGACTATTATGACGTGCTTGGTGTGAGTAGGAATGCAAGTTCTTCTGAAATAAAGAAAGCATACTATGGGCTTGCAAAGAAGCTCCATCCAGACACAAACAAAGATGATCCTGAGGCTGAAAAGAAGTTTCAAGAAGTTTCAATGGCATATGAGGTTTTGAAGGATGAGGAAAAGCGTCAACAGTATGATCAGGTTGGGCATGATGCTTATGTAAACCAACAAAGCACTGGTTTTGGAGGCAGCAGTGGCTTTAATCCGTTTGAGCAGATATTCCGTGATCATGATTTTGTCAAGAGCTTTTTTCATCAGAATATTGGTGGGGAGGATGTCAAGACTTTCATTGAACTATCCTTTATGGAAGCTGTCCAAGGATGCACCAAAACTATTACATTTCAAACAGATGTGCTTTGTAACACTTGTGGTGGGAGTGGGGTTCCTCCTGGTACAAGACCTGAAACCTGTAAGCGCTGTAAAGGATCAGGAGTGACATTTGTACAAGCTGGCATATTTAGGATGGAGAGTACTTGTGGTACATGCAAGGGAACTGGCAAAATTGTATCGAATTTCTGCAAGTCATGCAGGGGTGCGAAGGTTATCAAAGGAACAAAGTCGGTCAAGTTGGATATTATGCCTGGGATGGACAACAATGAAACCATAAAGGTTTACAGGAGTGGTGGTGCAGATCCTGATGGAGATCACCCTGGTGATCTTTATGTTACTATCAAGGTCAGGGAAGATCCTGTCTTCCGTAGAGAAGGATCTGATATTCATGTAGATACTGTTTTAAGTATCACTCAGGCCATTTTGGGTGGAACCATTCAGGTTCCAACTCTCACTGGAGATGTTGTTCTTAAGGTTCGTCCTGGAACCCAACCTGGTCAGAAGGTGGTTCTGAAAAAGAAAGGGATCAAGACAAAAAATTCTTATACATTTGGGGATCAATACGTTCATTTTAACGTCAGCATCCCAGTAAACTTGACAGAGAGACAGCGTGAATTGATTGAAGAGTTTGCCAAGGAAGAGCAAGGGGAATTTGATAAAGAGAGAGCTGCTTCTGCTTCTGGTTGA 1332 0.4272 MVRSNGVRFIRSLPAKLLHDANKSIYEGVFQRGYRTLNSGLCNSSRVIGSFSSNVGDGVNLKNWMPLGAAKTYWGASRSIHGSASLARDYYDVLGVSRNASSSEIKKAYYGLAKKLHPDTNKDDPEAEKKFQEVSMAYEVLKDEEKRQQYDQVGHDAYVNQQSTGFGGSSGFNPFEQIFRDHDFVKSFFHQNIGGEDVKTFIELSFMEAVQGCTKTITFQTDVLCNTCGGSGVPPGTRPETCKRCKGSGVTFVQAGIFRMESTCGTCKGTGKIVSNFCKSCRGAKVIKGTKSVKLDIMPGMDNNETIKVYRSGGADPDGDHPGDLYVTIKVREDPVFRREGSDIHVDTVLSITQAILGGTIQVPTLTGDVVLKVRPGTQPGQKVVLKKKGIKTKNSYTFGDQYVHFNVSIPVNLTERQRELIEEFAKEEQGEFDKERAASASG. 444
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g07046 443 Gene3D DnaJ domain 86 197 IPR036869 -
Seca4g07046 443 Gene3D - 198 327 - -
Seca4g07046 443 Gene3D - 332 440 - -
Seca4g07046 443 CDD DnaJ_C 196 414 - -
Seca4g07046 443 SUPERFAMILY DnaJ/Hsp40 cysteine-rich domain 212 287 IPR036410 -
Seca4g07046 443 PRINTS DnaJ domain signature 126 146 IPR001623 -
Seca4g07046 443 PRINTS DnaJ domain signature 146 165 IPR001623 -
Seca4g07046 443 PRINTS DnaJ domain signature 109 124 IPR001623 -
Seca4g07046 443 PRINTS DnaJ domain signature 91 109 IPR001623 -
Seca4g07046 443 FunFam Molecular chaperone DnaJ 217 290 - -
Seca4g07046 443 Gene3D - 225 285 - -
Seca4g07046 443 Pfam DnaJ domain 89 151 IPR001623 -
Seca4g07046 443 ProSiteProfiles Zinc finger CR-type profile. 212 290 IPR001305 GO:0031072|GO:0051082
Seca4g07046 443 CDD DnaJ_zf 225 285 IPR001305 GO:0031072|GO:0051082
Seca4g07046 443 ProSitePatterns Nt-dnaJ domain signature. 131 150 IPR018253 -
Seca4g07046 443 ProSiteProfiles dnaJ domain profile. 89 154 IPR001623 -
Seca4g07046 443 CDD DnaJ 89 143 IPR001623 -
Seca4g07046 443 Hamap Chaperone protein DnaJ [dnaJ]. 86 439 IPR012724 GO:0005524|GO:0006457|GO:0009408|GO:0051082
Seca4g07046 443 FunFam Chaperone protein dnaJ 1, mitochondrial 332 438 - -
Seca4g07046 443 PANTHER DNAJ HOMOLOG 1, MITOCHONDRIAL-RELATED 53 436 - -
Seca4g07046 443 SUPERFAMILY Chaperone J-domain 88 190 IPR036869 -
Seca4g07046 443 SMART dnaj_3 88 146 IPR001623 -
Seca4g07046 443 Pfam DnaJ C terminal domain 201 411 IPR002939 -
Seca4g07046 443 FunFam Chaperone protein dnaJ GFA2, mitochondrial 86 197 - -
Seca4g07046 443 SUPERFAMILY HSP40/DnaJ peptide-binding domain 336 422 IPR008971 GO:0006457|GO:0051082
Seca4g07046 443 Pfam DnaJ central domain 225 285 IPR001305 GO:0031072|GO:0051082
Seca4g07046 443 SUPERFAMILY HSP40/DnaJ peptide-binding domain 195 333 IPR008971 GO:0006457|GO:0051082
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g07046 Seca-Chr4 149512259 149527453 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g07046 82 151 C2H2 Transcription Factor Family AT1G74250 41.333 7.76e-08 52.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g07046 K03686 - gmx:100815834 792.341