Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g07042 ATGGCTGCTCTGCACACTTCTCTGCTCTTACAACCCAATTTCCTTTCCCTAACTACCCCATCCACTCACACCGCGTCCAACTTGAGACTCACAACCACCCACTTACAACCCCTTCTCAAGTTGGTGCCTTCCCTCACCGTTGGAACTCCCACTACGACACGCCGTTCTCGTGCGATGGCTGAACAAGCTACGGTTACCTCGTCCGACCCCAAATCCGAGGCTGCCAGGAGGCTCTACGTCGGCAACATTCCTCGCACTGTCACCAACGATGAGCTTGCAAAGATTGTGGAAGAGCATGGTGCTGTTGAGAAAGCAGAGGTTATGTATGATAAATACTCTGGAAGGAGCCGTCGTTTTGCATTTGTTACAATGAAAACTGTTGAGGATGCAAATGCAGCAATTGAGAAACTTAATGGCACTCAAATTGGAGGGCGTGAGATTAAAGTAAATATAACTGAAAAGCCTCTATCAACAGTAGATTTGAGTATACTCCAGGTGAGATTAAAGTAA 510 0.4725 MAALHTSLLLQPNFLSLTTPSTHTASNLRLTTTHLQPLLKLVPSLTVGTPTTTRRSRAMAEQATVTSSDPKSEAARRLYVGNIPRTVTNDELAKIVEEHGAVEKAEVMYDKYSGRSRRFAFVTMKTVEDANAAIEKLNGTQIGGREIKVNITEKPLSTVDLSILQVRLK. 170
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g07042 169 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 76 154 IPR000504 GO:0003723
Seca4g07042 169 SUPERFAMILY RNA-binding domain, RBD 66 154 IPR035979 GO:0003676
Seca4g07042 169 CDD RRM1_PSRP2_like 77 156 - -
Seca4g07042 169 SMART rrm1_1 77 150 IPR000504 GO:0003723
Seca4g07042 169 Gene3D - 49 157 IPR012677 -
Seca4g07042 169 FunFam 30S ribosomal protein 2, chloroplastic 55 156 - -
Seca4g07042 169 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 78 148 IPR000504 GO:0003723
Seca4g07042 169 PANTHER OS02G0815200 PROTEIN 28 154 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g07042 Seca-Chr4 149428327 149431275 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g07042 54 154 Eukaryotic Initiation Factors Gene Family AT1G71770 36.634 1.00e-12 63.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g07042 K13126 - gmx:100811197 206.838
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca4g07042 4 149428327 149431275 Seca4g07042 4 149428327 149431275 ECH