Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g07028 ATGGACCCTGTGAAAGCAGTGGAATTGGTAGATGAGAACACCATCTGTGTTGCAGCCATTTTGGGGTCAACTCTGACTGGAGAGTTTGAGGAGGTGAAGCTTGTTAATGAACTTCTTACTCTTCTTACTCAAAAGAACAAGGAGACAGGGTGGGATACCCCAATTCATGTAGATGCTGCCAGTGGGGGGTTTATTGCCCCATTCCTCTACCCTGGTCTAGAGTGGGACTTCCGTTTGCCATTGGTGAAGAGCATCAATGTTAGTGGTCACAAGTATGGTCTTGTCTACCCTGTGTTGGTTGGGTTGTCTAGAGGAGTAAAGATGACTTGGCAGAGGATCTTGTTTTTCATATAA 354 0.4576 MDPVKAVELVDENTICVAAILGSTLTGEFEEVKLVNELLTLLTQKNKETGWDTPIHVDAASGGFIAPFLYPGLEWDFRLPLVKSINVSGHKYGLVYPVLVGLSRGVKMTWQRILFFI. 118
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g07028 117 SUPERFAMILY PLP-dependent transferases 1 97 IPR015424 -
Seca4g07028 117 Gene3D - 1 104 IPR015421 GO:0003824
Seca4g07028 117 Pfam Pyridoxal-dependent decarboxylase conserved domain 1 96 IPR002129 GO:0016830|GO:0019752|GO:0030170
Seca4g07028 117 PANTHER GLUTAMATE DECARBOXYLASE 1 98 IPR010107 GO:0004351|GO:0006536|GO:0030170
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g07028 Seca-Chr4 148897379 148897732 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g07028 1 96 Calmodulin-binding Proteins AT2G02010 88.542 4.08e-55 177
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g07028 K01580 - gmx:100796475 180.644