LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Seca4g07012	ATGTGGAGATTTAAGCCATTCATGCACAAAGAGCCAACTGGTCTTGAAGGTCGTTCTATAGACGTTGGAAATCTTAAAATACATGTCCACAGGGCCATTGCTGAAGGAGGGTTCTCGTGTGTCTACTTAGCTCGTGATGCTGTACATATGTCAAAACAATATGCTTTGAAGCACATAATATGCAATGATGAAGAATCACTTGGATTAGTAAAGAAGGAGATATCTGTGATGAAGTTGCTGGTAGGCCATCCGAATGTCGTCACACTTCATGCACATACAATCTTTGATATGGGTAGGACAAAAGAGGCATTCCTTGTCATGGAATTTTGTGACAAGTCTCTGGTCAATGTGCTGGAGAGCCGGGGAGTTGGTTATTTTGATGAGAAACAGGTTCTTTTAATCTTTAGGGATGTTTGTAACGCAGTTTTCGCTATGCACTGCCAGTCCCCACCTATTGCTCACCGAGACTTGAAAGCGGAGAATCTTTTATTAGGTTCAGATGGTTTGTGGAAGTTGTGTGATTTTGGAAGCACTTCCACCAATCACAAACGTTTTGAGAAGCCAGAAGAAATGGGGATTGAGGAAGACAATATCAGGAAATACACAACCCCTGCATACAGAGCACCAGAGATGTGGGATCTGTTCCTGAGAGAAGTCATTAATGAGAAAGTTGATATATGGGCACTTGGTTGTCTCCTTTTTCGTATATGCTACTTCAAAAGTGCATTTGATGGGGAATCAAAGCTCCAAGTCTTAAATGGAAACTACCGCATTCCAGATTTACCTAAATACAGTTCATCTGTCACGGACTTAATCAGAGACATGCTTCAAGCTAGACCAGATGACAGACCAGATATCACGCAGGCAAGCGCTTTGCTTGATTGGCCATTCATCTCCATCAATTTAGGTTGGTTTGGTTTCGTGTCAATGAGCAGTTACCTGTTAATTTACAAAAGTCATTACCTGACAGACCACCTGAATCGCCCTCTTCCAACAATCACGAAGAGGCAAAAAGCTCTTGGTGCTTCAATGTCCACAAACAAATCACCTCCAATGCCTCGTAGGAATCCACCTCCTCCACCTTCAGTTGGAGAACCCAAAACTGCACCTCAGCCATCCCCTGCTTCTAGGGGTGGGGGAACTGGGGGGCAGCTTGGTGCTTTCTGGTCCACTCAGCATGCAAAGGATTCACTTGTCCTTGAGGAAAAGGGCAAACCTATATATGATGAAGAACCATCTAGCCACCATATGTCATCAAAACATGATAGAGTCCGTCCCGACCATGATCAATTACCAAAAAATGTTAATACTAACAAAGTGGTTAACACACAAACTCATACTGTAAAAAGCAGTATACATGGAAAATTACATAAGCCTGATACTGTATCATCAAAGGACTTTGAAATAAATTTTTTTCAGGATAAAGATAATGCAAGTGAGAGGCGAATGTCAAATATGGAGAATAATGCTAACTTTCAAGACCAGGCTTTCAACACTTTTGTTGCAGAATTTGATACCACTAAGCTCAAATCTGGATTTGGTAACAAATCCGAAAGGGAAGAAGCATTAGAGGCTGAGGTTGAGAAACTCAAAGAGCAGCTGAAGGAAGCTTACTTGGAGAAAGCTGAAATAACTTCAAAGTATGAAAAGCTTTCTGCTATCTGCCGATCGCAAAGGCAAGAATTACAGGATCTCAAACAAGCACTTGCAGCAAGGACTCCATCACCATGCAGAGAGGGTTTGAGAACCTCTCCTGGAGTTACATCACCTGCATCTTCGAGGGAGAAGATTGGCGGGACTGCTTGGGAACTTCAGCAGGATAAAAATGAATGGAAAACTCCTAGTTCAGAACCAAAGTCATGGCAAGCTTTTCCGGAGGAACCTGAACCAGTAAAATCCTTTTCAGCTGACAGTTCTTCTAAATCTGTCAGGTCAAGAAATGGTCAGCAGAACAAGCAGCCTACTCAAATAGCTTCTGATTTCGATACATGGGGTTTTGGGACAGAGAAATTCAGTGCTGTACGTGCTGGCAGCCCACAGATGCCATTACCTAGTGAAGGGAGTAAAGGTCAGGTGTTTGGTGAGACAAAGGCCTTTGATAGCAAGTCAACTTCTCAACCTGCAGGATGGGCTGGTTTTTAA	2142	0.4276	MWRFKPFMHKEPTGLEGRSIDVGNLKIHVHRAIAEGGFSCVYLARDAVHMSKQYALKHIICNDEESLGLVKKEISVMKLLVGHPNVVTLHAHTIFDMGRTKEAFLVMEFCDKSLVNVLESRGVGYFDEKQVLLIFRDVCNAVFAMHCQSPPIAHRDLKAENLLLGSDGLWKLCDFGSTSTNHKRFEKPEEMGIEEDNIRKYTTPAYRAPEMWDLFLREVINEKVDIWALGCLLFRICYFKSAFDGESKLQVLNGNYRIPDLPKYSSSVTDLIRDMLQARPDDRPDITQASALLDWPFISINLGWFGFVSMSSYLLIYKSHYLTDHLNRPLPTITKRQKALGASMSTNKSPPMPRRNPPPPPSVGEPKTAPQPSPASRGGGTGGQLGAFWSTQHAKDSLVLEEKGKPIYDEEPSSHHMSSKHDRVRPDHDQLPKNVNTNKVVNTQTHTVKSSIHGKLHKPDTVSSKDFEINFFQDKDNASERRMSNMENNANFQDQAFNTFVAEFDTTKLKSGFGNKSEREEALEAEVEKLKEQLKEAYLEKAEITSKYEKLSAICRSQRQELQDLKQALAARTPSPCREGLRTSPGVTSPASSREKIGGTAWELQQDKNEWKTPSSEPKSWQAFPEEPEPVKSFSADSSSKSVRSRNGQQNKQPTQIASDFDTWGFGTEKFSAVRAGSPQMPLPSEGSKGQVFGETKAFDSKSTSQPAGWAGF.	714

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Seca4g07012	713	MobiDBLite	consensus disorder prediction	570	713	-	-
	Seca4g07012	713	MobiDBLite	consensus disorder prediction	408	432	-	-
	Seca4g07012	713	FunFam	probable serine/threonine-protein kinase DDB_G0280111	10	301	-	-
	Seca4g07012	713	MobiDBLite	consensus disorder prediction	697	713	-	-
	Seca4g07012	713	PANTHER	SERINE/THREONINE PROTEIN KINASE	1	695	-	-
	Seca4g07012	713	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	152	164	IPR008271	GO:0004672\|GO:0006468
	Seca4g07012	713	MobiDBLite	consensus disorder prediction	606	620	-	-
	Seca4g07012	713	MobiDBLite	consensus disorder prediction	633	662	-	-
	Seca4g07012	713	SMART	serkin_6	27	298	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Seca4g07012	713	MobiDBLite	consensus disorder prediction	337	387	-	-
	Seca4g07012	713	Pfam	Protein kinase domain	28	289	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Seca4g07012	713	Gene3D	Transferase(Phosphotransferase) domain 1	11	296	-	-
	Seca4g07012	713	CDD	STKc_GAK_like	26	288	-	-
	Seca4g07012	713	SUPERFAMILY	Protein kinase-like (PK-like)	28	298	IPR011009	-
	Seca4g07012	713	MobiDBLite	consensus disorder prediction	351	368	-	-
	Seca4g07012	713	ProSiteProfiles	Protein kinase domain profile.	27	298	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Seca4g07012	713	MobiDBLite	consensus disorder prediction	408	434	-	-
	Seca4g07012	713	Coils	Coil	513	568	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Seca4g07012	Seca-Chr4	148179949	148183856	Dispersed/Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Seca4g07012	26	286	Miscellaneous Gene Families	AT2G34180	29.520	5.05e-19	89.0

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	NAK	Seca4g07012		Pkinase	6.2e-39	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Seca4g07012	K08853		-	gmx:100808507	1006.51