Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g07009 ATGGAGGTTTTCACGGTTTGCAATAAAGCTCGATCGATTTTCAACTTGATCAATGGTTATTCTGGTGTTTCGTTGCTGTTTGGTGGTGATTCTGATGTGAAGGTTGGGGCATCCCTATGCACTATCTACTATTTGAATGTTGTTCTTTTACATGGGCAACAGGGAGATGCTGTGATGAAGGCTGAATTTTGTGGTTTTGACTTAGCAAAAGAAAAAGCTTGCAGGATGCTGGTTTTTGCTATTTCATTAATGAAGGGCATCTTCGAGATTTTATCTTTATCTGGCTCATGTACCTACACTGGTGCTGGTGGTGCACTTCGTAAAAGTGGCATGTTGAGTGTTTCACTGGCTAAACCTGATGGGAGGGTTTTTGGAGGTGGCATTGAGAGCTCATTGATAACAGCTGACCCTATTCAAAGGCAAGAGAAAAGCTCTGTGGCGTGA 444 0.4257 MEVFTVCNKARSIFNLINGYSGVSLLFGGDSDVKVGASLCTIYYLNVVLLHGQQGDAVMKAEFCGFDLAKEKACRMLVFAISLMKGIFEILSLSGSCTYTGAGGALRKSGMLSVSLAKPDGRVFGGGIESSLITADPIQRQEKSSVA. 148
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g07009 147 Gene3D - 45 140 - -
Seca4g07009 147 SUPERFAMILY AF0104/ALDC/Ptd012-like 83 138 - -
Seca4g07009 147 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9 85 139 IPR039605 GO:0003680
Seca4g07009 147 Pfam Plants and Prokaryotes Conserved (PCC) domain 73 138 IPR005175 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g07009 Seca-Chr4 148026428 148029774 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g07009 85 139 AT-hook Motif Nuclear Localized (AHL) Family AT4G12080 54.545 7.88e-12 59.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g07009 - - aip:107632385 87.8113