Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g07003 ATGGAAAACAAGAACCATAGTCTAGACCCAGACCTAGAGAAGCAACACCAGGCCTGGGGCACATGGGAAGAGCTCTTGCTAGCGTGCGCCGTCAACCGCCATGGCTTCAAAGACTGGGACACCGTCGCTATGGAAGTCCAGTCCCGCACCAACCGCCCCAACCTCCTCGCCACCGCACACAACTGCGAGCAAAAATTTCACGATCTTAACCGCCGATTCACCGACCAATGCAACGACGTCGTTTCGCCGCCCCGCCAAAACGGTGCCTCCGTGGGCGTTAACTCCGATCACGTCCCTTGGCTCGAAGAATTGCGTAAACTCCGCGTCGCCGAACTCCGGCGAGAGGTCCAACGCCATGACGTCTCCATTCTGTCCTTGCAGCTGCAGGTTAAGAGGTTGGAAGAGGAAAAAGCGAAAGAGAATGACGGAAAAGATGACGAACCCCCAGATCTGGGGGTTCGCTGCGAGCAGCGGCCGGAAAATGACAAAACCGGCGGAGAACTAGAAGAGGCTGGACCGGCCAATTCTGAACAGGAGATTCGCCGGCTCGATGAGAGCACCACTAACACTGATAAGCTTCCACCAACAACGGGTGACGAATCGGACCGGGAGAATCAGTCAGTAAATGAGTCTAACTCGACCGGTTCGAGGTTCGAGGTAGCGAAAACCGGGGAGGGTAACGCTAAGTTGGGGCTTGGACCGCCCCCGGTTCAAGCCGGTCCAAAAGAACCGGATTCGGTCGGAAGGAAGAAAAAATCGGTTGGAGAAGAATCGAATAACGGAAGTTACGATACCGAGGCTAAAGTCCCAACGTGCGAGTCGGTGCCTCCGAGTGAGGAGAGAAAGGTGGACGAGGACTCCTCCGAGTTGCACGACTCAGTGGCTCACTCGGGGGAGGGAGGGACGAGAGAGAGCAGCGAGGTGCAAAGCTCTGCGAGCTTGACGAGGAAGAGGCAGACGCGGCGAAGAAAGGAGGTTTCCAGCGCCGACGGTGGTGGTGAGTTGGCGCCGGAGAACGACGACGTTATGAAATCAGAACCGTTGGCTGGCATATTAGATATGATCAAAGGACATGAAAACATCTCCTTGTTGCGCCATCTCGAAATCCAGCAGCAGTACTCGGATAGATACAAAGACGTGGTGAGACAGCATGTGGACTTGGAAACCATACAATTGAGACTCCAAAAGGGTTACTATTCCTCATGCACGAGCTCTTTCTTCCGCGACCTCCTCCTCCTCTTCACCAACGCCACCGTGTTCTTCCCCCTAGACTCGGCGGAATCAAGGGCGGCGCGGCACCTGCACCGCATCATTGTCACTGAGATGAAAAGCCATGGCCAAACACAATCCGATCCTATCCCCCAAAAGAACGATTCACTCCCTCCAAACGCACCACTGGCCAATCCAGATTCTTCTCTCCTCTCCAAGCACAAAGCCTCTGCTCCTATACTAGTTTGCCGCAAACGCAGTTCAATCTCAGCCAAACCTTCCTCAGCCACCTTTGGCCAAAAGGGTGACCAACAACCCGTTATCAATGACAAGAAGGAAAGGCTACCTTCTGATGCAAAACCACCCTTGAAACCTTCTTCTTCTGAGACAGACGAAGATGAACCTCCCAAGGCCAAGGAAAAGCCTGTCACTGGAGCGAGAAGCTTGAGGAGAAGCAATAAGAATCTCAACAGCAACCCTGGCAGTAAGAAACTACCTTCTAATTCTAACTCTACTCCTAAAGCAGGGTCCTCGGTGAACAAGCCTAGTGAAACCGTGAAACTGGACAAGAGCAAAGCAGAGGTGGTGCCGGACAAGAAGAGGAATGCCGCTGCTGATTTCTTGAAACGGATAAAGCGAAACACTTCAGGAGAGGCGCTGAGGAGTGGTGGTGGTGGTAGTGGTGGAGGAGGAGGAGGAAGTAGCAGCAGCAGCAGGGGTGGTGGAGGTGGTGTTACTGTTAGTGTGAAAGAGCAGAAGAAAATGGTGAGTAGTGGAAAGGGGGACAAAGGGAAAGAGAGGCCTTCAAGGCACAACGGTGGAGGAGGGTCAGGGGATAAAAGAAACAAGAATATTGAGAACAACTCTCAGTCCAAGAGGAGTGTTGGGAGACCTCCAAAGAAGGCAGCAGAGACCAATACAGTTAGTGCAAAGCGTGGTAGGGAAAGTAGTGCAAGCGCTGGCAAGGATAAACGACCTAAGAAGCGATCTAAGAAATGA 2208 0.5303 MENKNHSLDPDLEKQHQAWGTWEELLLACAVNRHGFKDWDTVAMEVQSRTNRPNLLATAHNCEQKFHDLNRRFTDQCNDVVSPPRQNGASVGVNSDHVPWLEELRKLRVAELRREVQRHDVSILSLQLQVKRLEEEKAKENDGKDDEPPDLGVRCEQRPENDKTGGELEEAGPANSEQEIRRLDESTTNTDKLPPTTGDESDRENQSVNESNSTGSRFEVAKTGEGNAKLGLGPPPVQAGPKEPDSVGRKKKSVGEESNNGSYDTEAKVPTCESVPPSEERKVDEDSSELHDSVAHSGEGGTRESSEVQSSASLTRKRQTRRRKEVSSADGGGELAPENDDVMKSEPLAGILDMIKGHENISLLRHLEIQQQYSDRYKDVVRQHVDLETIQLRLQKGYYSSCTSSFFRDLLLLFTNATVFFPLDSAESRAARHLHRIIVTEMKSHGQTQSDPIPQKNDSLPPNAPLANPDSSLLSKHKASAPILVCRKRSSISAKPSSATFGQKGDQQPVINDKKERLPSDAKPPLKPSSSETDEDEPPKAKEKPVTGARSLRRSNKNLNSNPGSKKLPSNSNSTPKAGSSVNKPSETVKLDKSKAEVVPDKKRNAAADFLKRIKRNTSGEALRSGGGGSGGGGGGSSSSSRGGGGGVTVSVKEQKKMVSSGKGDKGKERPSRHNGGGGSGDKRNKNIENNSQSKRSVGRPPKKAAETNTVSAKRGRESSASAGKDKRPKKRSKK. 736
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g07003 735 MobiDBLite consensus disorder prediction 588 619 - -
Seca4g07003 735 MobiDBLite consensus disorder prediction 174 188 - -
Seca4g07003 735 Coils Coil 116 143 - -
Seca4g07003 735 MobiDBLite consensus disorder prediction 632 646 - -
Seca4g07003 735 CDD Bromodomain 377 442 - -
Seca4g07003 735 MobiDBLite consensus disorder prediction 551 587 - -
Seca4g07003 735 CDD SANT 18 50 IPR001005 -
Seca4g07003 735 MobiDBLite consensus disorder prediction 135 167 - -
Seca4g07003 735 SMART sant 15 72 IPR001005 -
Seca4g07003 735 Gene3D - 337 452 IPR036427 GO:0005515
Seca4g07003 735 SMART bromo_6 341 447 IPR001487 GO:0005515
Seca4g07003 735 MobiDBLite consensus disorder prediction 275 298 - -
Seca4g07003 735 MobiDBLite consensus disorder prediction 443 473 - -
Seca4g07003 735 MobiDBLite consensus disorder prediction 684 698 - -
Seca4g07003 735 MobiDBLite consensus disorder prediction 494 735 - -
Seca4g07003 735 Pfam Myb-like DNA-binding domain 17 50 IPR001005 -
Seca4g07003 735 MobiDBLite consensus disorder prediction 509 550 - -
Seca4g07003 735 MobiDBLite consensus disorder prediction 658 680 - -
Seca4g07003 735 Pfam Bromodomain 354 432 IPR001487 GO:0005515
Seca4g07003 735 MobiDBLite consensus disorder prediction 299 315 - -
Seca4g07003 735 SUPERFAMILY Bromodomain 349 454 IPR036427 GO:0005515
Seca4g07003 735 SUPERFAMILY Homeodomain-like 12 51 IPR009057 -
Seca4g07003 735 MobiDBLite consensus disorder prediction 135 342 - -
Seca4g07003 735 ProSiteProfiles Bromodomain profile. 377 428 IPR001487 GO:0005515
Seca4g07003 735 PANTHER DNA-BINDING BROMODOMAIN-CONTAINING PROTEIN 2 735 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g07003 Seca-Chr4 147929102 147934100 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Seca4g07003 Bromodomain 1.6e-07 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g07003 - - gmx:100779988 983.015