Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g07001 ATGATTTCCTACTATGAACTTTCACTGGCAACCAATGGGTTTGATGAGAGTAATCTACTTGATTACAAGCTTTTAGCAATAGAATTCATGCCCAATGAGAGCCTTGAAAGGTGGTTGTATTCTCATAACTATTATTTGGACTTCTTGCAAAGGCTAAATATAATGATAGATGTAGCTTCTGCATTGGATTATATGCATCATGGTTCTTCACCAATTGTGGTTCACTGTGATGTAAAGCCTAGTAATGTCTTATTGGATGAAAACATGGTTGCTCATTTAAGTGACTTTGGCATTGCCAAACTTCTAAATGATGGACAATCCAAAGAATATACCAAAACCATGGCTACACTTGGCTACACTGCACCAAGATTGAACATGAAAGGTTGGATTAGTGAGTCATTACCCCATGCAATCACTCAAATTGTGGATTCGAATTTGTTACAAGATGAAGGTCGCAGTATTGATGATATAACATCTATATTATCTATTTTCAGATTGGCCTTGAATTGTTGTGCAGATTTACTTGAAAAACGAAGGAATATGACAATGGTTGCTCCATCATTAAACAAAATCAAGGTCATGTATGTGTCCAAAAATTAA 600 0.355 MISYYELSLATNGFDESNLLDYKLLAIEFMPNESLERWLYSHNYYLDFLQRLNIMIDVASALDYMHHGSSPIVVHCDVKPSNVLLDENMVAHLSDFGIAKLLNDGQSKEYTKTMATLGYTAPRLNMKGWISESLPHAITQIVDSNLLQDEGRSIDDITSILSIFRLALNCCADLLEKRRNMTMVAPSLNKIKVMYVSKN. 200
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g07001 199 ProSitePatterns Serine/Threonine protein kinases active-site signature. 73 85 IPR008271 GO:0004672|GO:0006468
Seca4g07001 199 SMART serkin_6 5 194 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca4g07001 199 SUPERFAMILY Protein kinase-like (PK-like) 17 128 IPR011009 -
Seca4g07001 199 Pfam Protein kinase domain 22 124 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca4g07001 199 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE IMK3-RELATED 124 191 - -
Seca4g07001 199 FunFam Os07g0541700 protein 30 117 - -
Seca4g07001 199 ProSiteProfiles Protein kinase domain profile. 1 199 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca4g07001 199 Gene3D Transferase(Phosphotransferase) domain 1 7 199 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g07001 Seca-Chr4 147870471 147871529 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g07001 21 195 Receptor kinase-like Gene Family AT3G47570 31.140 5.54e-26 102
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XII-1 Seca4g07001 Pkinase 7.9e-20 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g07001 - K13420 gmx:100784397 267.314