Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g06990 ATGGAACTTGGTTTGAGCTTAGGAGACTCTTCAAGGCCTTTAGTGGTGGGGTTCATGGAAGAGCCTCATGAAGCCTCAGCTTCTTCCAAGGAACTTGGCTTAGGCTTCAACACCACCTTATCAATTAGTTCAATCATCACTAGACAAAGAGATCCACAAGAAGAAGAAAAACCAAAGAAAGACAATAACCATGGAACTGAAGATCAACATGAAGCCACAAATGAATATCTTAATCCTCCTTCTTCTTCCAATAAGGCTAACAATAACCCTGTCCCACATCAGCTTGATCTTCTTCCTCAGCTCTCCTTCCCATGGCTTCCTACTGAAAACGAGTCTCTGTTGTTGATACATGCAGGGAGTTTATCAAAGGGGTTGGACGTGAACGTGGTGCCGGCGGCGCCTCTGGTGGCGGAGGATGAGGCGCAGGAAGGGGCGGCGCTGTCATCATCCCCTAACAGCGCAGCATCTTCTTTTCAGATGGATCTCTGCATATACAGCAGAGGAGGTGGAGGGAGTTTGAGTGGTTCAGGAGGGAAGAGGGATTCTGATGGTGAGGCTTATGATCAAAGGGCTTCTTCAAGAGCAAGTGATGAAGATGAAAACGGTGGTGGTAGCACCAGGAAGAAGCTAAGGCTCTCCAAGGAACAATCTGCTTTCCTTGAAGAGAGCTTCAAAGAACACAATACTCTTAACCCTAAACAAAAACTTGCACTTGCAAAACAACTCAATCTTCGTCCTCGCCAAGTAGAAGTCTGGTTCCAAAACAGAAGAGCAAGGACTAAATTGAAGCAAACAGAAGTGGATTGTGAGTACTTGAAGAGATGCTGTGAGACACTGACGGAAGAGAATAGGAGGCTTCACAAGGAGCTTCAAGAATTGAGGGCTTTGAAGACTTCAAACCCATTTTACATGCAATTACCAGCTACTACCTTGACCATGTGCCCTTCTTGTGAGCGTGTCGCCACTAATTCCACCTCCACTACTACTCCTAATGCCACCAGCAATGTTAATAATACCTCAGCCACTGCTAATAATGACTCCACTTCTAAAACCATTGGATTCCCCTTTGGAAAACCCAGATTTCATCCATTCGCTCACACCAGTCCACAACAGCATCTTGAATTGAATTAA 1131 0.4545 MELGLSLGDSSRPLVVGFMEEPHEASASSKELGLGFNTTLSISSIITRQRDPQEEEKPKKDNNHGTEDQHEATNEYLNPPSSSNKANNNPVPHQLDLLPQLSFPWLPTENESLLLIHAGSLSKGLDVNVVPAAPLVAEDEAQEGAALSSSPNSAASSFQMDLCIYSRGGGGSLSGSGGKRDSDGEAYDQRASSRASDEDENGGGSTRKKLRLSKEQSAFLEESFKEHNTLNPKQKLALAKQLNLRPRQVEVWFQNRRARTKLKQTEVDCEYLKRCCETLTEENRRLHKELQELRALKTSNPFYMQLPATTLTMCPSCERVATNSTSTTTPNATSNVNNTSATANNDSTSKTIGFPFGKPRFHPFAHTSPQQHLELN. 377
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g06990 376 MobiDBLite consensus disorder prediction 170 211 - -
Seca4g06990 376 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN HAT14 64 342 - -
Seca4g06990 376 SMART halz 263 306 IPR003106 GO:0006355|GO:0043565
Seca4g06990 376 CDD homeodomain 207 264 IPR001356 GO:0003677
Seca4g06990 376 FunFam Homeobox-leucine zipper protein 18 191 268 - -
Seca4g06990 376 Coils Coil 276 299 - -
Seca4g06990 376 ProSitePatterns 'Homeobox' domain signature. 238 261 IPR017970 GO:0000981|GO:0006355
Seca4g06990 376 Gene3D - 211 261 - -
Seca4g06990 376 Pfam Homeodomain 207 261 IPR001356 GO:0003677
Seca4g06990 376 MobiDBLite consensus disorder prediction 321 352 - -
Seca4g06990 376 SMART HOX_1 205 267 IPR001356 GO:0003677
Seca4g06990 376 MobiDBLite consensus disorder prediction 72 93 - -
Seca4g06990 376 SUPERFAMILY Homeodomain-like 192 264 IPR009057 -
Seca4g06990 376 MobiDBLite consensus disorder prediction 43 93 - -
Seca4g06990 376 Pfam Homeobox associated leucine zipper 263 297 IPR003106 GO:0006355|GO:0043565
Seca4g06990 376 ProSiteProfiles 'Homeobox' domain profile. 203 263 IPR001356 GO:0003677
Seca4g06990 376 MobiDBLite consensus disorder prediction 181 211 - -
Seca4g06990 376 MobiDBLite consensus disorder prediction 49 71 - -
Seca4g06990 376 MobiDBLite consensus disorder prediction 321 376 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g06990 Seca-Chr4 147473146 147475055 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g06990 87 326 Homeobox Transcription Factor Family AT5G47370 55.422 1.84e-70 221
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Seca4g06990 Homeodomain 2.8e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g06990 K09338 - gmx:100805312 446.817