Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g06986 ATGGAGCTTGATTTGAATCAGGAGCCTTTAGATCAGATAGAAGAACGTATTAGACGCCTTGAAGCAGTAATTTTCAGGGCAAGACAGCGCCAGAGGTGGCGACAGGGTCACACTCCAATTCAGATAAGTAACTTTGCAGGAGAATTGGTAACAACAGATAATAATGTTCAAGATGAAAGGAGGGTGCACCATGAAGAGGTTGGTAATGATGTTGAAGGAGGGATAGTGAATGGTGAGAATTTGGGCAAAAAGAAGACTTCCTATTTAGTTGCTAAAGCATTGGGGATGGAATCATATACCAATAATGCAGATGGCTGTGCTGGAAACATATTTGATTGTAATATATGCTTGAACATGGCAAGAGATCCTGTTTTGACCTGCTGTGGTCACTTGTTCTGCTGGCCATGCTTCTATAGGTTATCATATACTTATTCAAATGTTAGGGAATGCCCCGTTTGTGATGAAAAGGTCAATGAAACAAGCATCATCCCTATTTATGGCAATGCATGTGCCAATGGTAGTGGTCACTTGGAATTGAAAGAAACTGGTTTGAGAGTCCCTCCTCGACCCCGTGCACCTAGAATTGAGAGTATTAGGCAGTAG 603 0.4196 MELDLNQEPLDQIEERIRRLEAVIFRARQRQRWRQGHTPIQISNFAGELVTTDNNVQDERRVHHEEVGNDVEGGIVNGENLGKKKTSYLVAKALGMESYTNNADGCAGNIFDCNICLNMARDPVLTCCGHLFCWPCFYRLSYTYSNVRECPVCDEKVNETSIIPIYGNACANGSGHLELKETGLRVPPRPRAPRIESIRQ. 201
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g06986 200 Coils Coil 192 200 - -
Seca4g06986 200 Pfam zinc-RING finger domain 113 154 IPR001841 -
Seca4g06986 200 SUPERFAMILY RING/U-box 112 159 - -
Seca4g06986 200 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 97 167 IPR013083 -
Seca4g06986 200 ProSiteProfiles Zinc finger RING-type profile. 113 154 IPR001841 -
Seca4g06986 200 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF5-RELATED 74 194 IPR045103 GO:0005783|GO:0006511|GO:0061630
Seca4g06986 200 SMART ring_2 113 153 IPR001841 -
Seca4g06986 200 Coils Coil 10 30 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g06986 Seca-Chr4 147404213 147404815 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g06986 94 199 C3H Transcription Factor Family AT3G58030 45.794 7.65e-28 107
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g06986 - - lang:109334311 288.885