Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g06958 ATGGCCACGACGGTAACGGCAACGGCGGCAGAGCAAGAATTAAAAACATACTGGTGCCACGAATGCGACATGAGTGTGGCTTTGACTTGGTCTCCCTCTCCTTCTCCTTCCCCTCTCTTGTGCCCCCATTGTCACTCTCACTTCCTTGAACTCATGGACTCTCCCTTCGACCAAAACGACGCCGAATCGCCTCTCCCTTCCTCCCTCTTCGACGTCGTTTTCCAAGACGCCCTCGCACTGTTCTCACCCCCTTCCTCCACCAAGACTCGCGCTGTCACCGTCCCTGTAATCGCGGTCACACCCGCACTCCTCTCTAACCTCGACCAAAACGGCGTCGTATTGTGCGCCGTCTGTAAAGATCAAATCGCCGTTGACGCTGAGGCCAAACAGCTCCCATGCGACCATCTCTACCACTCCGATTGCATCACGCCATGGCTCGAGATTCGTGGCTCCTGCCCCCTCTGCCGGTTCCGCCTCACAGAGGAAGAAGAAGAAGAAGAATACGATGATGGTTCCGCCATCAGGAGGGAGCTCATGGTGAGGCTGTCAGAGTTGACGGAGGATGATTTCTATGGATTGAGGACCACTCTCAATCACATTGTTTCCAGACACGCACTCCATGCGAGGCGAGAGAACGAGAATCGTGCTCCAGTGACTGAACCTGGTGGCGGTGGAGATGGAGGAGAATCTGTTTAG 696 0.5517 MATTVTATAAEQELKTYWCHECDMSVALTWSPSPSPSPLLCPHCHSHFLELMDSPFDQNDAESPLPSSLFDVVFQDALALFSPPSSTKTRAVTVPVIAVTPALLSNLDQNGVVLCAVCKDQIAVDAEAKQLPCDHLYHSDCITPWLEIRGSCPLCRFRLTEEEEEEEYDDGSAIRRELMVRLSELTEDDFYGLRTTLNHIVSRHALHARRENENRAPVTEPGGGGDGGESV. 232
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g06958 231 ProSiteProfiles Zinc finger RING-type profile. 115 156 IPR001841 -
Seca4g06958 231 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 67 159 - -
Seca4g06958 231 MobiDBLite consensus disorder prediction 208 231 - -
Seca4g06958 231 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 105 174 IPR013083 -
Seca4g06958 231 SMART ring_2 115 155 IPR001841 -
Seca4g06958 231 SUPERFAMILY RING/U-box 109 161 - -
Seca4g06958 231 Pfam Ring finger domain 115 156 IPR001841 -
Seca4g06958 231 Pfam zinc-ribbon 16 52 IPR039525 GO:0061630
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g06958 Seca-Chr4 146821548 146822243 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g06958 56 167 C3H Transcription Factor Family AT3G02340 34.821 6.19e-19 82.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g06958 K11982 - gmx:100775530 262.692