Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g06956 ATGGAGATATTGTCGCAAATGTGGTCACTGTTAGGGTTACTCACGGTGCTCCAAAATGTGCTTCCATCACAGCTTCTCTCCGTTCTTCATTCTCTGTACGAATCTCTGCAAGATTTGCTCTCTCCTTATTCCTATTTTGAGATTCCAGAGTTCAACGGCTACTGCAGCGTGGAACTAAACGACCTTTACCGCCACGTCCACCTTTACCTCAACGCTGTGAACCATTCCCCCGCCGCCGCGTGCCGCCGCCTCACTCTGTCACGTTCCCCTTCCTCCAACCGCATTTCCTTCGCCGTGGCACCGAACCACACCGTTCACGACAACTTCCACGGCCACCGCCTCTCCTGGACGCACCATGTGGACACAGTGCAGGACTCCGTCGAAGAAAAGCGCAGCTTCACCCTCCGGCTCCCGAAGCGCCACCGCCACGCGCTACTCTCCCCTTACCTCGCTCACGTGACCGCACGCGCTGAGGAGTTCGAGCGTGTCTCGCGCGAGCGCAGGCTCTTCACCAACAACAACGGATCCGGATCGTTTGAATCGGGTTGGGTCTCGGTTCCTTTCCGCCACCCTTCCACGTTCGAAACCCTAGCCTTAGAGCCTGAGTTGAAAAAGCAGATCAAGGACGACCTAACCGCTTTTGCCACGGGTAAGGAGTTCTACCACCGGGTCGGGCGGGCGTGGAAGCGCGGGTACCTGCTCCATGGTCCTCCCGGGTCGGGTAAATCCAGCCTCATTGCTGCCATGGCGAATTTCCTCTGCTACGACGTCTATGACTTGGAACTCACCAAGGTCACTGATAACTCCGAGCTCCGGTCGCTGCTAATCCAAACGACGAACCGTTCGATCATCGTTATCGAGGATATTGATTGCTCCGTGGATTTAACTGCGGACAGAACGACGAAGAAAATGGCCGCGAAGTTGTCATCAAAAGCGAGAAAGGATAAAACGACGTCGTCTCTATCGTCTTCGGGTTGTGAGGAGAGCGGGCGGGTCACGCTTTCGGGGCTCCTGAATTTCACGGACGGGTTATGGTCTTGCTGTGGGGAAGAGAGGCTGGTGGTATTTACGACGAACCACAGGGACAGTGTTGACCCGGCGTTGGTTCGGTGCGGACGCATGGACGTGCACGTGAGTCTCGGCACGTGCGGGGTGCACGCGTTTAAGGAGCTAGCGAGGAACTACCTTGGTGTCGAGTCGCACGTGATGTTCGAGGCTGTGGAAGGGTGCATTCGTTCGGGTGGGTCCCTAACGCCGGCGCACGTGGGTGAGATTCTGTTGAGGAACAGAGGGGATGCTGACGTCGCGATGAGGGAGGTGCTGTCCGCCATGCAAGCCAGGATGCTTGCCGTCGCCGCCGTCTCCGCCGACCAGACGGATAATGAGGAGACGGCGGTGGGGATGGGAGTGAGGTCTCCGGAGAGTGTGCTCCTGATGGGGTCGCCGGAGAATTGGGATTCCTTGAGTGGGAAGAAGAGGAAGGAGCAACATGGGTCGAGTCATTGGGATAAGAAGGTCAAGTTTTTTGTGAGGTTAAGGTCGTTGACCAAATCTGACTCTGGTAGATAA 1569 0.566 MEILSQMWSLLGLLTVLQNVLPSQLLSVLHSLYESLQDLLSPYSYFEIPEFNGYCSVELNDLYRHVHLYLNAVNHSPAAACRRLTLSRSPSSNRISFAVAPNHTVHDNFHGHRLSWTHHVDTVQDSVEEKRSFTLRLPKRHRHALLSPYLAHVTARAEEFERVSRERRLFTNNNGSGSFESGWVSVPFRHPSTFETLALEPELKKQIKDDLTAFATGKEFYHRVGRAWKRGYLLHGPPGSGKSSLIAAMANFLCYDVYDLELTKVTDNSELRSLLIQTTNRSIIVIEDIDCSVDLTADRTTKKMAAKLSSKARKDKTTSSLSSSGCEESGRVTLSGLLNFTDGLWSCCGEERLVVFTTNHRDSVDPALVRCGRMDVHVSLGTCGVHAFKELARNYLGVESHVMFEAVEGCIRSGGSLTPAHVGEILLRNRGDADVAMREVLSAMQARMLAVAAVSADQTDNEETAVGMGVRSPESVLLMGSPENWDSLSGKKRKEQHGSSHWDKKVKFFVRLRSLTKSDSGR. 523
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g06956 522 Gene3D - 189 378 IPR027417 -
Seca4g06956 522 MobiDBLite consensus disorder prediction 482 501 - -
Seca4g06956 522 Pfam ATPase family associated with various cellular activities (AAA) 233 380 IPR003959 GO:0005524|GO:0016887
Seca4g06956 522 PANTHER BCS1 AAA-TYPE ATPASE 7 445 - -
Seca4g06956 522 SMART AAA_5 228 382 IPR003593 GO:0016887
Seca4g06956 522 Gene3D - 379 451 - -
Seca4g06956 522 ProSitePatterns AAA-protein family signature. 352 370 IPR003960 GO:0005524|GO:0016887
Seca4g06956 522 MobiDBLite consensus disorder prediction 487 501 - -
Seca4g06956 522 Pfam Domain associated at C-terminal with AAA 21 119 IPR025753 -
Seca4g06956 522 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 139 405 IPR027417 -
Seca4g06956 522 CDD RecA-like_BCS1 207 378 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g06956 Seca-Chr4 146751810 146753378 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g06956 230 381 Calmodulin-binding Proteins AT3G56690 28.571 1.57e-08 55.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g06956 K08900 - gmx:100820437 902.508