Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g06950 ATGAAAACAACTAAAAACACCCTCCCCCCTCCCCCTCCTCCTCCTCCCCCTCCTCCTCCTCCTCAAACTCTTCCTATCCTCCTCCCTCCTCCTCCTCCTCCTCCTCAAACTCTTCCTCCTCCTCCTCAAACTAAAGTAAACAAAGTCCCAACAAAAAGGAAGGTGTCACTAAAACTGATTGAGAATTTGAAAGTAAGAAAATGTTGTTACGAAAAAAGAACTGAAGGGTTGTTAAAGAAGATAAAGGAGCTTTCCATACTTTGTGGTATCCCTACATACCCAGTCATCTCTGGTCCAAGTGATACTGAGCTTGGAATATGGCCATCCCCTAAAGTGGCTAAACAACTACTACAGAGGCTCGAGGAAGTTCCAAAGGGTGTTAGAAACGTGGATACCCAATTGTCTTTTATGCGTGATAAGACAAAAAAGTTAGAAAATCAACTTTCCAGACTCAAGGAGAGGAACAATGAGAAAGAAGTGTCAATTTTAATGCATCAAATCCATCATGATGGTAAGTCTTTATCTGATTTTGAGCCTAGTGATTTGAAGTGTTTACTTGGTTATGTGGAGCAAAAACTGAACAAAGTTAGAATGAGAACCAAACATTTTAAGCAGGTGTTGCCTCCTAATCCCCCTCCACCACCACCACCAGTGTCTTATCCTCAAGAGAATGAGGTCCTAGAGAAACAATCATCCTTAGATTTGGTGAAAGAGGTTGATCAGTTGAATAGTGGTTTTGATAATGATAATAATATAGGTAGTAGCAACATGGGGCTACCACCACCACATGCAAATCTTAGTGATGTTGATATGGTGTTGCCCCAAGAGAATTTTGGAGGTTTCAATAATGTAAGTGATTTAGGGGTGTTTCCTCCAAGAAATTTTGGAGATCTCATTGGTGAAAGTGACCTAGGGTCAGAGGTGTTCTCTCTTAGTGATTTTGGAGCCCTCATTAGTGAGAGTGACTCAGGGTTAGGGGCATTTCGTCTAGAGAATTTTGGAGGTCTCATTGGTGAAAGTGATGAAGGCAATTTTGAAGGTCTCAATGTTGAGAGTGACTCGGGGGTGTTACCTCAAGACAATTTTGGAGGTCTCAATGGTGAAAGTGATTTAGGAATGTTGCTTGAAGACAAACTTAAAGGTCTCAATGGTGAAAGGGGTGATAGTTCACTGGTGTGGCCTGAAGGCAATTTTGGAGATCTCAATGATGGAAGTGATCTCTTAGAGATGTATAATTTTGAAGGTCTCAATGGTGAAAATGGTGATAGTTCACAGGTGTTGCCTGAAGGCAATTTTGGAGATCTCAATGATGGAAGTGATCTCTTAAAGATGTTGTTTGAAGGTAATTTTGAAAGTCTCAATGGTGAAAGTAATTCAGGGCTTCTGAATGGAAGCTCTATTAATGAAATGGGAGGTAGTAACATATGGCCATCTTATGGGCATTTTGAAAGTACAATTGATGGAAGTTACATGGAAAAAGAGCAGCATAATGAAAATCAAGGAGGGTTCATTAACAACTCTGGAGCCAACACGCATGAAGCTGCAATGGGGAGATTCGATGCAAACTTTGTTGGCAATAACAATGGAAATAACTTGAATTTTGGATTGCCTACTCATGGAAATTTTGCTAGTAGCAGTGAATTTGGAAGTGATACTCAAGTGCCTACATCATTTGGAGGAAATTTTCCTTGA 1692 0.4054 MKTTKNTLPPPPPPPPPPPPPQTLPILLPPPPPPPQTLPPPPQTKVNKVPTKRKVSLKLIENLKVRKCCYEKRTEGLLKKIKELSILCGIPTYPVISGPSDTELGIWPSPKVAKQLLQRLEEVPKGVRNVDTQLSFMRDKTKKLENQLSRLKERNNEKEVSILMHQIHHDGKSLSDFEPSDLKCLLGYVEQKLNKVRMRTKHFKQVLPPNPPPPPPPVSYPQENEVLEKQSSLDLVKEVDQLNSGFDNDNNIGSSNMGLPPPHANLSDVDMVLPQENFGGFNNVSDLGVFPPRNFGDLIGESDLGSEVFSLSDFGALISESDSGLGAFRLENFGGLIGESDEGNFEGLNVESDSGVLPQDNFGGLNGESDLGMLLEDKLKGLNGERGDSSLVWPEGNFGDLNDGSDLLEMYNFEGLNGENGDSSQVLPEGNFGDLNDGSDLLKMLFEGNFESLNGESNSGLLNGSSINEMGGSNIWPSYGHFESTIDGSYMEKEQHNENQGGFINNSGANTHEAAMGRFDANFVGNNNGNNLNFGLPTHGNFASSSEFGSDTQVPTSFGGNFP. 564
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g06950 563 PANTHER SERUM RESPONSE FACTOR HOMOLOG 53 240 - -
Seca4g06950 563 ProSiteProfiles MADS-box domain profile. 50 96 IPR002100 GO:0003677|GO:0046983
Seca4g06950 563 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 60 99 IPR002100 GO:0003677|GO:0046983
Seca4g06950 563 PRINTS MADS domain signature 72 87 IPR002100 GO:0003677|GO:0046983
Seca4g06950 563 PRINTS MADS domain signature 52 72 IPR002100 GO:0003677|GO:0046983
Seca4g06950 563 Coils Coil 127 161 - -
Seca4g06950 563 SUPERFAMILY SRF-like 52 124 IPR036879 GO:0003677|GO:0046983
Seca4g06950 563 SMART madsneu2 50 109 IPR002100 GO:0003677|GO:0046983
Seca4g06950 563 Gene3D - 64 165 IPR036879 GO:0003677|GO:0046983
Seca4g06950 563 MobiDBLite consensus disorder prediction 1 46 - -
Seca4g06950 563 MobiDBLite consensus disorder prediction 1 51 - -
Seca4g06950 563 CDD MADS_SRF_like 51 129 IPR033897 GO:0000981|GO:0000987|GO:0045944
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g06950 Seca-Chr4 146590697 146592388 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g06950 51 232 Type I MADS-box Gene Family AT2G40210 33.690 1.51e-19 89.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Seca4g06950 SRF-TF 5.8e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g06950 - - gmx:106798339 200.675