Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g06946 ATGCGTCAGTTTGTTTGCAATAGGGAGGGTTTAAGGAAGAAGAAGCACCTTATGAGGGTGGATAGGAAGAGAGAGCATAGGCCACTTACCCGTACAAACTGCCAAGCTAAGCTTCGTATACACTACGATTACAAGATTTTTAAATGGATAGTTGTGTCCTTTGAGGAGTGTCATAAACATGAACTTACCCCATCAAGATATGTTCACTTACATTCTGCTTATCGTAGTTTGACAGATGGGGATAAGGGCCAGGTTGACATTTTGCATGCATATGGTGTTAGAAGTTGTCACATCATGGGGTACCTAGTAGCTCAGAAAGGGGGATATGGTCGAGTTGGTTTTACAAAGAAGGACATGTACAATTATCTTGACCGTAAAAATCAAGCAAAGATTAAGAAAGGGGATGTACGTGCTGGTTTGAGTTATCTACAGGGTAAGGCAGACAGTGATCCCTTGTTATATGGGAAGTACTCTACTACTTCTGATGGCAAATTGAAGCATCTTTTTTGGGCAGATGGAGGATGTAGGTGTGATTATCAATGCTTTGGTGATGTTCTTGCTTTTGATACCACTTACAAGAAGAACAAGTACAATTATCCTGTTGTTATATTCTCTGGATGCAATCACCATTCTCAAACTGTAATTTTTGGATGTGCTTTGGTTTCAGATGAAACAACTAAAACTTATAAGTGGGTTTTAGAAGCTTTTTTGGAAGCAATGGGAAAGAGACAACCAAAAGCAGTTATAACAGATGGTGATGCTGCAATGAGGGAAGCGATAAAACAAGTGTTTCCAGAATCATGTCATCGATTGTGTGCATGGCACCTACATAATAATGCCTGTGATAATGTGAAAAATTATGCGTTCTTGCAGGATTTCAAGACAGCAATGTACTCCAATTTCAACCCAGATGAATTTGAGGAGTATTGGAAGAAAATTGTTGATGAACATGGTCTTTCAACAAACAAATGGGTGTTAAAAACTTATGAAAACAAGTCATTATGGGCTTCTGCGTATCTTTGGGATAATTTCTTTGGACGCATTAGGACGACATCTCAATGTGAGTCTATCAATTCCTTTATTAAGTCATATGTTAAGAAGAAGAGCAGCATTGTTGAGTTTCTGCACAAGTTTGATCATGCTTTGAAGGAATATAGAAATAATGAATTGATGGCTGATTTTAAGACTTTTTACTCTCAGCCTGTGTTAACTACATACCTTCGTAACATTGAGAAGCAAGCTTCTGAAATTTATACTCAAGCAATTTTCAGAGAAGTTAAACAGGAAATTGAGAAGGCCAATGCTTTAATTGTTTGTGATCGGTCTCAAAATGGGGAGAAGTTGTTGTTCAATTTGAAAAGATATTGTAAACCTAGAAAGGAAATTCAGGTTGTGTTTGATACTGCTGAAACTACATTTTGTTGTGATTGTAGACTATTTGAGTGTAAAGGCATTCCATGTTGCCATATAATATCTATTATGAGAAATGAGGATGTAGATTATATCCCTAGTAGTTTGATATGCAAACGATGGTCAAAGACTGCCAAGTCTGATTTCATTTCCTTTTATAAGCCAGATGAAATGGAGTCTGATGTTATGGATCAAGCTTGTTATGCTGCTGTTTCTGCTGCTTGTGACAATTTTACCAAAGTAGCGTCAAAAAAGAGGAATTACTTAAATCAGATATTGGATGACATTCACAAACTTACTCTGAAGTATGAGACTTTAGGGGATGGGGTTAGCACAGATTGTAATCCGACAGGTTTGAAAATTAGTGATCCTACTGTTGTGAAAACTAAAGGAGCTCCTAGGAAAAAAAGTTCAGCAAGAAAAGAAATAGACATTGTTCCAATTGCTCTAGCAGTGCACATACAATTAGGAGGTGTCCTACTGTTATTCGGAAAAGTGTCAAAAGATCGAATAATGATGAGCTACAACCTTCTGAAAGTAGTGACAACAGTGTAG 1965 0.3725 MRQFVCNREGLRKKKHLMRVDRKREHRPLTRTNCQAKLRIHYDYKIFKWIVVSFEECHKHELTPSRYVHLHSAYRSLTDGDKGQVDILHAYGVRSCHIMGYLVAQKGGYGRVGFTKKDMYNYLDRKNQAKIKKGDVRAGLSYLQGKADSDPLLYGKYSTTSDGKLKHLFWADGGCRCDYQCFGDVLAFDTTYKKNKYNYPVVIFSGCNHHSQTVIFGCALVSDETTKTYKWVLEAFLEAMGKRQPKAVITDGDAAMREAIKQVFPESCHRLCAWHLHNNACDNVKNYAFLQDFKTAMYSNFNPDEFEEYWKKIVDEHGLSTNKWVLKTYENKSLWASAYLWDNFFGRIRTTSQCESINSFIKSYVKKKSSIVEFLHKFDHALKEYRNNELMADFKTFYSQPVLTTYLRNIEKQASEIYTQAIFREVKQEIEKANALIVCDRSQNGEKLLFNLKRYCKPRKEIQVVFDTAETTFCCDCRLFECKGIPCCHIISIMRNEDVDYIPSSLICKRWSKTAKSDFISFYKPDEMESDVMDQACYAAVSAACDNFTKVASKKRNYLNQILDDIHKLTLKYETLGDGVSTDCNPTGLKISDPTVVKTKGAPRKKSSARKEIDIVPIALAVHIQLGGVLLLFGKVSKDRIMMSYNLLKVVTTV. 655
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g06946 654 Pfam MULE transposase domain 185 279 IPR018289 -
Seca4g06946 654 ProSiteProfiles Zinc finger SWIM-type profile. 460 498 IPR007527 GO:0008270
Seca4g06946 654 PANTHER OS01G0519700 PROTEIN 2 609 - -
Seca4g06946 654 SMART 26again6 473 500 IPR006564 GO:0008270
Seca4g06946 654 Pfam FAR1 DNA-binding domain 2 63 IPR004330 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g06946 Seca-Chr4 146468240 146471636 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Seca4g06946 MULE 3.5e-30 CL0219
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g06946 - - ccaj:109792835 806.208