Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g06930 ATGTATATAGGAGAGTCTGAGAAGAATGTTCGAGACATTTTTCAAAAGGCCAGATCAGCACAGCCATGTGTCATCTTCTTTGATGAGCTTGATTCTCTTGCACCAGCTCGGGGTGCTTTTGGAGATTCTGGGGGTGTTATGGACAGGGTGGTTTCTCAGATGCTTGCAGAGATTGATGGCTTAAGTGATTCAACACAGGATCTATTTATTATAGGTGCAAGTAATAGACCAGATTTGATAGACCCGGCACTTTTGCGCCCTGGTCGATTTGATAAACTGTTATATGTTGGAGTTAACTCTGATGCATCTTACAGGGAGTGGGTCCTGAAAGCTCTTACCCGAAAGTTCAAATTGCATGAAGATGTTTCACTTTACTCTATAGCAGAAAAATGTCCACCAAACTTCACCGGTGCAGACATGTATGCCTTGTGTGCAGATGCTTGGTTCCACGCCGCAAAGCGCAAGGTTTTAAGTGCAAATCCAGAGTCTTCCAGCCAAGATAATGATGCAGATTCTGTTGTTGTTGAATACAATGATTTTGTCCAGAATGCCTTGCTCAACTATAGACAGTGCCAACACTATGAATCCAAATGGTGGAAACACCTTGGAATAGCTAAGGAAGTCCAGTTTGCTAGATATCAACCTGTTAAATGGTACATGTGGCCCATGGCATGCTTCACAGATGCACGCTTTTCAAACCAAAGGATTGAGCTCACAAAACCTATCTCTCTAATCTACATTATCGATGACATTTTCGATGTTCATGCCACATTAGACCGGCTTACTCTATTTACAAACGCTGTTAACAGATGCGAATTGGCTGGCACAGAGCAGCTAAATTTGATTGCTTGGGCTATTCACAGATGGCTCCTCTCTTTCTCCAATTGGCTTCTCCTTGCACTTGATCTATGGGCATCTACACAAGGCCTTCTTCTGCTGGAATTTGCTCTTCAATTCCACAGTAATCCAGATTGCTACCCTTTGGCAATCAAGTTATGTAACTTTGGGAAAGAGTGCAGTGGTGGAGGACTAATAGCATATAGTGATGCAGGACCAGCACAGAGTGATCCAAACAGGAAAAAGAAGGTGGTGGTGCTTGGAACTGGTTGGTATTCTTTTACCCCAAAAATAATACCCATTTCCTAA 1146 0.4284 MYIGESEKNVRDIFQKARSAQPCVIFFDELDSLAPARGAFGDSGGVMDRVVSQMLAEIDGLSDSTQDLFIIGASNRPDLIDPALLRPGRFDKLLYVGVNSDASYREWVLKALTRKFKLHEDVSLYSIAEKCPPNFTGADMYALCADAWFHAAKRKVLSANPESSSQDNDADSVVVEYNDFVQNALLNYRQCQHYESKWWKHLGIAKEVQFARYQPVKWYMWPMACFTDARFSNQRIELTKPISLIYIIDDIFDVHATLDRLTLFTNAVNRCELAGTEQLNLIAWAIHRWLLSFSNWLLLALDLWASTQGLLLLEFALQFHSNPDCYPLAIKLCNFGKECSGGGLIAYSDAGPAQSDPNRKKKVVVLGTGWYSFTPKIIPIS. 382
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g06930 381 Pfam ATPase family associated with various cellular activities (AAA) 2 97 IPR003959 GO:0005524|GO:0016887
Seca4g06930 381 PANTHER AAA-FAMILY ATPASE 1 183 - -
Seca4g06930 381 Pfam Terpene synthase family, metal binding domain 196 287 IPR005630 GO:0000287|GO:0010333|GO:0016829
Seca4g06930 381 ProSitePatterns AAA-protein family signature. 68 86 IPR003960 GO:0005524|GO:0016887
Seca4g06930 381 Gene3D - 6 98 IPR027417 -
Seca4g06930 381 Gene3D - 99 182 - -
Seca4g06930 381 FunFam Peroxisome biogenesis protein 6 99 185 - -
Seca4g06930 381 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1 154 IPR027417 -
Seca4g06930 381 SUPERFAMILY Terpenoid synthases 188 294 IPR008949 -
Seca4g06930 381 Gene3D Farnesyl Diphosphate Synthase 193 298 IPR008949 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g06930 Seca-Chr4 146099962 146104087 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g06930 2 168 Calmodulin-binding Proteins AT3G56690 37.500 4.19e-25 105
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g06930 K13339 - gmx:100820183 351.288