Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g06921 ATGGAAACAACTAAAAACACCCTCCCCCCTCCTCCTCCTCCTCAAACACTTCCTCCTCCTCCTCCTCCTCCTCAAACTAAAGTAAACAGAGCCCCAACAAAAAAGAAGGTGACTAAAAGGAAGGTGTCACTAAAACTGATTGAGAATTTGAAAGTAAGAAAAAGTTGTTACAAAAAAAGATCTCTAGGGTTGTTAAGGAAGATGAAGGAGCTTTCCATACTTTGTGGTATCCCTACATGCTCAGTCATCTCTGGTCCAGGTGATACTAAGCCTAAAATATGGCCATCCCCTAAAGTGGCTAAACAGCTACTAAAGAGGTTTGAGGAAGTTCCAAAAGGCGTTAAGTCCAGAAAAGTGGTTACCCAATTGTCTTTTATGCGTGATAAGACAAAAAAGTTAGAAAATCAACTTGCTAGGCTCAAGGAGAGGAACAATGAGAAAGATATGTCAATTTTAATGCATCAAATCCATCATGATGGTAAGTCTTTATCTGATTTTGAGCCTAGTGATTTGAAGCGTTTACTTGGTTATGTGGAGCAAAAACTGAACAAAGTTAGAATGATAACTAAGCATTTTAAGAAGGAGTTGCCTCCTAATCCTCCACCACCACCACCACCAGTGTCTTGTCCTCAAGAAAATGAGGTCCCACAGAAACAATCATCCTTAGATTTGGTGAAAGAGACACATCAGGTGAATAGTGGTTTTGATGATAATAATGTGGGTAGCAGCAGCATGGGGCTACCACGACCACATGAAAATCTTAGAGATGTTGATATGGTGTTTCCCCAAGATAATTTTGGTGGTTTCAATAATGTGAGTGATTTAGGGGTGTTTCCTCCAAGCAATTTTGGAGATCTCGTTGGTGAAAGTGACCTAGGGTCAGAGGTGTTCCCTCTTAGTGATTTTGGAGGCCTCATTGGTAAGACTGACTCAGGGTTAGGGGCATTTCCTCTAGAGAATTTTGGAAATCTCAATGGTGAAAGTGATCACTTAGGGTCAGAGGTGTTGCCTCCTCAAGGCAATTTTGAAGGTCTCAATGGTGAAAATGACTTGTGGTTGTTACCTCAAGGCAATTTTGAAGGTCTCAATGGTGAAAATGAATTATGGTTGTTACCTCAAGGCAATTTTGGAGGTCTCAATGGTGAAAGTGATGAAGGCAATTATGAAGGTCTCAACGTTGGAAGTGACTCAGAGGTGTTACCTCAAGGCAATTTTGGAGGTCTCAATGGTGAAAGTGATGAAGGCAATTATGGAGGTCTCAATGTTGGAAGTTACTCAGGGGTGTTACCTCAAGGCAATTTTGAAGGTCTCAATGGTGCAAGTGATGAAGGAAATTATGGAGGTCTCAATGTTGGAAGTGACTCAGGGGTGTTACCTCAAGGTAATTTTGGAGGTCTCAATGGTGAAAGTGATGAAGGCAATTTTGAAGGTCTTAATGTTGGAAGTGACTCATGGGTTTTACCTCAAGACAATTTTGGAGGTCTCAATGGTGAAAGTGATTTAGGAATATTGCTTGAAGACAATTTTGAAGGTCTCAATGGTGAAAGGGGTGATAGTTCACAGGTGTGGCCTGAAGGCAATTTTGGGGATCTCAATGATGGAAGTGATCTCTTAAAGATGTATAATTTTAAAGGTTTCAATAGTGAAAGTGGTGATAGTTCACGGGTATTTCCTGAAGGCAATTTTGGAGATCTCAATGATGGAAGTGATTTCTTAAAGACTTACATTGGAGGTAATTTTGAAGGTCTCAATGGTGAAAGTAATTCAGGGATTCTGAATGGAAGCTCTACTGATGAAATTGGAGGCAGTAACACATGGCCATCTTATGGACATTTTGAAAGTACAATTGGTGGAAGTTACATGGAAATAGGGAAGCATAATGAAAATCAAGGATGGTCCATTAACAACACAGGGCTAATTTGTGGTCATCAAAACAACTCTGGATCCAACACTAATGAAGCTGCTATGGGGAGATTCAATGCAAACTTTGTTGGCAATTACAATGGAAATAACTTGAATTCTGGATTTCCTACTCGTGGAAATTTTGCTAGTAGCGGTGAATTTGGAAGTGATACTCAAGTGCCTACATCATTTGGAGGAAATTTTCCTTGA 2112 0.402 METTKNTLPPPPPPQTLPPPPPPPQTKVNRAPTKKKVTKRKVSLKLIENLKVRKSCYKKRSLGLLRKMKELSILCGIPTCSVISGPGDTKPKIWPSPKVAKQLLKRFEEVPKGVKSRKVVTQLSFMRDKTKKLENQLARLKERNNEKDMSILMHQIHHDGKSLSDFEPSDLKRLLGYVEQKLNKVRMITKHFKKELPPNPPPPPPPVSCPQENEVPQKQSSLDLVKETHQVNSGFDDNNVGSSSMGLPRPHENLRDVDMVFPQDNFGGFNNVSDLGVFPPSNFGDLVGESDLGSEVFPLSDFGGLIGKTDSGLGAFPLENFGNLNGESDHLGSEVLPPQGNFEGLNGENDLWLLPQGNFEGLNGENELWLLPQGNFGGLNGESDEGNYEGLNVGSDSEVLPQGNFGGLNGESDEGNYGGLNVGSYSGVLPQGNFEGLNGASDEGNYGGLNVGSDSGVLPQGNFGGLNGESDEGNFEGLNVGSDSWVLPQDNFGGLNGESDLGILLEDNFEGLNGERGDSSQVWPEGNFGDLNDGSDLLKMYNFKGFNSESGDSSRVFPEGNFGDLNDGSDFLKTYIGGNFEGLNGESNSGILNGSSTDEIGGSNTWPSYGHFESTIGGSYMEIGKHNENQGWSINNTGLICGHQNNSGSNTNEAAMGRFNANFVGNYNGNNLNSGFPTRGNFASSGEFGSDTQVPTSFGGNFP. 704
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g06921 703 Gene3D - 51 136 IPR036879 GO:0003677|GO:0046983
Seca4g06921 703 MobiDBLite consensus disorder prediction 683 703 - -
Seca4g06921 703 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 47 87 IPR002100 GO:0003677|GO:0046983
Seca4g06921 703 CDD MADS_SRF_like 43 120 IPR033897 GO:0000981|GO:0000987|GO:0045944
Seca4g06921 703 PANTHER SERUM RESPONSE FACTOR HOMOLOG 40 211 - -
Seca4g06921 703 Coils Coil 123 150 - -
Seca4g06921 703 ProSiteProfiles MADS-box domain profile. 37 83 IPR002100 GO:0003677|GO:0046983
Seca4g06921 703 MobiDBLite consensus disorder prediction 193 217 - -
Seca4g06921 703 SUPERFAMILY SRF-like 39 131 IPR036879 GO:0003677|GO:0046983
Seca4g06921 703 SMART madsneu2 37 96 IPR002100 GO:0003677|GO:0046983
Seca4g06921 703 MobiDBLite consensus disorder prediction 1 28 - -
Seca4g06921 703 MobiDBLite consensus disorder prediction 195 211 - -
Seca4g06921 703 MobiDBLite consensus disorder prediction 1 40 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g06921 Seca-Chr4 145943831 145945942 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g06921 37 212 Type I MADS-box Gene Family AT2G40210 33.523 1.23e-22 98.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Seca4g06921 SRF-TF 3.4e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g06921 - - mtr:25491525 213.001