Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g06892 ATGGGAACACCTGTGAACATCATCGTTGGATCACAGGTTTGGGTTGAGGATCCTGAGATTGCATGGATTGATGGTGAGGTGACACAAATCAATGGCACAAATGCCACCATCATTACCACAGATGGGAAAACTGTGGTGGCAGAAATTTCAAGTATATACCCTAAAGATACAGAGGCACCACCTGCAGGGGTTGATGACATGACCAAGCTAGCATACCTCCACGAGCCAGGAGTCCTGCATAACCTTGCCTGTCGTTTTTCTCTCAATGAGATATATACATATACAGGAAATATCTTAATAGCAGTGAATCCTTTTCGAAGACTACCACACTTGTATGACATCCATATGATGGAGCAGTACAAAGGAGCAGCATTTGGAGAGCTGAGTCCTCACCTTTTTGCTGTAGCAGACACCTGTTACAGGGCAATGATAAATGAAAATGGAAGTCAATCCATTTTGGTAAGTGGAGAGAGTGGAGCTGGTAAAACTGAGACAACAAAAATGCTAATGAGATATCTAGCCTTCATGGGGGGTAGATCAGGTACAGAAGGAAGAACTGTAGAACAACAGGTTTTGGAGTCCAATCCAGTGTTGGAAGCATTTGGAAATGCCAAAACTGTTAAAAACAACAATTCAAGTCGTTTTGGTAAATTTGTTGAAATTCAATTTGACAAGAATGGGAAGATTTCTGGAGCTGCAATCCGTACATATCTCCTTGAAAGGTCACGAGTTTGCCAGATCTCTGAGCCGGAGAGAAACTATCATTGCTTTTACATGCTTTGTTCAGCACCACCAGAGGATGTCAAAAAGTACAAGTTAGGGGACCCAAGGCAATTCCACTACCTTAATCAATCAAGCTGTTACGAAGTGTCAAATGTAGATGATGCAAAAGAATACTTGGAAACCAGAAATGCAATGGATATTGTAGGTATCAGCCAGGATGAGCAGGATGCCATCTTTCGTGTGGTGGCTGCAATCCTTCATCTTGGAAACATTAATTTTGTCAAAGGGAGTGAAGTTGATTCTTCCAAACTGAAAGATGACAAATCACTCTTCCACCTTCGAACAGTTGCAGAGTTATTCATGTGCGATGAGAAATCACTAGAAGACTCACTTTGCAAGCGTGTCATTGTTACTCCTGATGGTAACATTACAAAACCACTAGACCCAGATGCAGCTGCTTTGAGTCGAGATGCTTTGGCAAAGACTGTGTACTCCAGATTGTTTGATTGGATTGTGGACAAGATTAACAATTCAATTGGTCAAGATTCCAATGCAGTAAGCATAATAGGAGTCCTTGACATTTATGGATTTGAAAGTTTCAAAATCAACAGTTTTGAGCAATTATGCATCAACCTAACAAATGAGAAGTTGCAACAACATTTTAATCAGCATGTATTCAAGATGGAGCAAGAAGAGTACACAAAGGAAGAAATCAATTGGAGCTATGTAGAATTTGTGGATAATCAAGATGTTCTTGACCTTATTGAGAAGAAACCTGGGGGGATTATTGCTCTTCTAGATGAAGCCTGCATGTTCCCCAAGTCAACTCATGAGACTTTTGCACAAAAGATGTACCAGACATACAAAGGACACAAGCGCTTCAGCAAGCCTAAACTTTCTCGAACAAATTTCACAATTAACCACTATGCTGGAGATGTCACATACCAAGCAGATCATTTTCTTGATAAAAATAAAGATTATGTTGTAGCAGAGCATCAAGCTCTTTTATGTGCTTCCAAGTGCCCGTTTGTTGCTAATCTTTTCCCTCCTTTACCTGAGGAGACATCAAAGCAATCAAAATTCTCTTCCATTGGTTCACAGTTTAAGCAACAACTGCAATCACTCATGGAGACACTTAACACAACAGAACCACATTACATAAGATGTGTTAAGCCAAATACAGTTTTGCAGCCAGGAATCTTTGAGAACTTCAATGTCTTAAACCAGTTAAGATGTGGGGGAGTACTTGAGGCAATAAGAATTAGTTGTGCTGGATATCCAACAAAAAGAACATTTGAAGAGTTCCTTGATCGCTTTGGAATGCTAGCCCCCGACGTCCTTGATGGATCTGATGAGAAAAAGGCATCTATTGCCATCTGTGATAAGATGGGATTAAAAGGCTATCAAATGGGGAAAACAAAGGTATTTCTCAGAGCTGGTCAGATGGCTGAATTAGATGCACGAAGAGCCGAAGTCTTAGCTAAAGCAGCTAGACGCATACAGAGACAAATCCGGACACATTTAACCAGGAAAGAGTTCATTACCCTGAGAAATGCCACAATTCATATCCAGAAGATTTGGAGAGCAAAACTAGCACGTAAACTCTATGAGTATATGAGGAGGGAAGCAGCTTCTATCCGGATACAGAAACATGTGCGTGCACACAGAGAAAGAATGTATTATACATCATTACAAGCATCATCTATTGTTATTCAATCAGGGATGAGAGCATTAGCAGCGCGAAATGAATATAGATACAGAAGAAGAACAAAGGCTTCAACCAAAATTCAGACACAATGGAGAAGAGTCCAAGCTCTTTCTGATTACAAACAGCAGAAGAAGGCAACTATTATACTTCAGTGTCTCTGGAGAGCTAGAGTGGCACGAAAAGAGCTCAGAAAGCTTCGGATGGCTGCAAGGGAAACTGGGGCACTTAAGGAAGCCAAGGACAAGTTGGAGAAGCGTGTTGAGGAGCTTACGTGGAGACTGGATATTGAAAAGCACTTGCGGATTGACCTTGAAGAAGCAAAAGGGCAAGAGATAGCAAAATTACAAAATGCTTTACAAGAAATGCAAGCTCAGCTTGATGAAGCCCATGCTGCAATTATACATGAGAAAGAAGCAGCAAAATTGGCAATTGAACAAGCACCACCAGTAATCAAAGAGGTACCTGTTGTAGACAACACCAAGCTAGAGTTACTGACAAATAAAAATGAGGAGCTGGAGAGTGAAGTAGAAGAGCTGAAAAAGAGAATTAAAGATTTTGAAGAAAGGTGCTCGGAAATTGAAAAAGAGAATCAAGCAAGGCTGAAAGAGGCAGAAGAAGCACAACTTAAAGCAGCACAACTTCAGGAAACTATTGAAAGATTAGAATTGAGTTTGTCAAACCTTGAGTCCGAGAACCAGGTTCTATGTCAGCAGTCTTTGGTAGAATCAAAAAATGAAGAACTCTCTGAAGAGATTAAAGCACTCAAGGGTCAGATAGAAAACCTAGAATCAGAAAATGAATTCCTACGGAGCCAGGCAGCAGCACCAGCTTTAGAGCAGAAAGTTCATCCAGAAAAAATAGAAACGGATCAGGAAGTTGCTATTGTAGAACAGATTCAACCGAGAGTTATTGCAGTTAATATGAATGCACAAATCAAGGTACACTACTTCAAGCTTTCCCTTAGAATGGTCTCATTATGTGACAATTATCTTTTATGA 3429 0.4042 MGTPVNIIVGSQVWVEDPEIAWIDGEVTQINGTNATIITTDGKTVVAEISSIYPKDTEAPPAGVDDMTKLAYLHEPGVLHNLACRFSLNEIYTYTGNILIAVNPFRRLPHLYDIHMMEQYKGAAFGELSPHLFAVADTCYRAMINENGSQSILVSGESGAGKTETTKMLMRYLAFMGGRSGTEGRTVEQQVLESNPVLEAFGNAKTVKNNNSSRFGKFVEIQFDKNGKISGAAIRTYLLERSRVCQISEPERNYHCFYMLCSAPPEDVKKYKLGDPRQFHYLNQSSCYEVSNVDDAKEYLETRNAMDIVGISQDEQDAIFRVVAAILHLGNINFVKGSEVDSSKLKDDKSLFHLRTVAELFMCDEKSLEDSLCKRVIVTPDGNITKPLDPDAAALSRDALAKTVYSRLFDWIVDKINNSIGQDSNAVSIIGVLDIYGFESFKINSFEQLCINLTNEKLQQHFNQHVFKMEQEEYTKEEINWSYVEFVDNQDVLDLIEKKPGGIIALLDEACMFPKSTHETFAQKMYQTYKGHKRFSKPKLSRTNFTINHYAGDVTYQADHFLDKNKDYVVAEHQALLCASKCPFVANLFPPLPEETSKQSKFSSIGSQFKQQLQSLMETLNTTEPHYIRCVKPNTVLQPGIFENFNVLNQLRCGGVLEAIRISCAGYPTKRTFEEFLDRFGMLAPDVLDGSDEKKASIAICDKMGLKGYQMGKTKVFLRAGQMAELDARRAEVLAKAARRIQRQIRTHLTRKEFITLRNATIHIQKIWRAKLARKLYEYMRREAASIRIQKHVRAHRERMYYTSLQASSIVIQSGMRALAARNEYRYRRRTKASTKIQTQWRRVQALSDYKQQKKATIILQCLWRARVARKELRKLRMAARETGALKEAKDKLEKRVEELTWRLDIEKHLRIDLEEAKGQEIAKLQNALQEMQAQLDEAHAAIIHEKEAAKLAIEQAPPVIKEVPVVDNTKLELLTNKNEELESEVEELKKRIKDFEERCSEIEKENQARLKEAEEAQLKAAQLQETIERLELSLSNLESENQVLCQQSLVESKNEELSEEIKALKGQIENLESENEFLRSQAAAPALEQKVHPEKIETDQEVAIVEQIQPRVIAVNMNAQIKVHYFKLSLRMVSLCDNYLL. 1143
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g06892 1142 Coils Coil 876 910 - -
Seca4g06892 1142 ProSiteProfiles Myosin N-terminal SH3-like domain profile. 8 57 IPR004009 GO:0003774|GO:0005524|GO:0016459
Seca4g06892 1142 Gene3D - 667 729 - -
Seca4g06892 1142 FunFam Class V myosin 439 578 - -
Seca4g06892 1142 Gene3D - 439 623 - -
Seca4g06892 1142 SMART MYSc_2a 56 732 IPR001609 GO:0003774|GO:0005524|GO:0016459
Seca4g06892 1142 Gene3D - 252 310 - -
Seca4g06892 1142 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 785 882 IPR027417 -
Seca4g06892 1142 PANTHER MYOSIN 54 1091 - -
Seca4g06892 1142 PRINTS Myosin heavy chain signature 149 174 IPR001609 GO:0003774|GO:0005524|GO:0016459
Seca4g06892 1142 PRINTS Myosin heavy chain signature 482 510 IPR001609 GO:0003774|GO:0005524|GO:0016459
Seca4g06892 1142 PRINTS Myosin heavy chain signature 429 457 IPR001609 GO:0003774|GO:0005524|GO:0016459
Seca4g06892 1142 PRINTS Myosin heavy chain signature 196 223 IPR001609 GO:0003774|GO:0005524|GO:0016459
Seca4g06892 1142 PRINTS Myosin heavy chain signature 92 111 IPR001609 GO:0003774|GO:0005524|GO:0016459
Seca4g06892 1142 ProSiteProfiles IQ motif profile. 757 786 IPR000048 GO:0005515
Seca4g06892 1142 ProSiteProfiles IQ motif profile. 734 761 IPR000048 GO:0005515
Seca4g06892 1142 Gene3D - 832 881 - -
Seca4g06892 1142 Gene3D - 784 831 - -
Seca4g06892 1142 Gene3D - 732 783 - -
Seca4g06892 1142 Pfam IQ calmodulin-binding motif 736 754 IPR000048 GO:0005515
Seca4g06892 1142 Pfam IQ calmodulin-binding motif 855 874 IPR000048 GO:0005515
Seca4g06892 1142 Pfam IQ calmodulin-binding motif 758 777 IPR000048 GO:0005515
Seca4g06892 1142 Pfam IQ calmodulin-binding motif 784 802 IPR000048 GO:0005515
Seca4g06892 1142 Coils Coil 972 1082 - -
Seca4g06892 1142 FunFam Myosin heavy chain 252 307 - -
Seca4g06892 1142 ProSiteProfiles IQ motif profile. 782 809 IPR000048 GO:0005515
Seca4g06892 1142 ProSiteProfiles IQ motif profile. 805 834 IPR000048 GO:0005515
Seca4g06892 1142 ProSiteProfiles IQ motif profile. 853 882 IPR000048 GO:0005515
Seca4g06892 1142 Gene3D Kinesin motor domain 65 662 IPR036961 -
Seca4g06892 1142 FunFam Myosin 2 312 429 - -
Seca4g06892 1142 FunFam unconventional myosin-Va 832 880 - -
Seca4g06892 1142 Gene3D Myosin VI head, motor domain, U50 subdomain 312 601 - -
Seca4g06892 1142 SMART iq_5 804 826 IPR000048 GO:0005515
Seca4g06892 1142 SMART iq_5 756 778 IPR000048 GO:0005515
Seca4g06892 1142 SMART iq_5 733 755 IPR000048 GO:0005515
Seca4g06892 1142 SMART iq_5 829 851 IPR000048 GO:0005515
Seca4g06892 1142 SMART iq_5 852 874 IPR000048 GO:0005515
Seca4g06892 1142 SMART iq_5 781 803 IPR000048 GO:0005515
Seca4g06892 1142 FunFam unconventional myosin-Va 736 784 - -
Seca4g06892 1142 Pfam Myosin head (motor domain) 64 719 IPR001609 GO:0003774|GO:0005524|GO:0016459
Seca4g06892 1142 Coils Coil 915 949 - -
Seca4g06892 1142 CDD MYSc_Myo11 76 719 IPR036018 -
Seca4g06892 1142 ProSiteProfiles Myosin motor domain profile. 62 731 IPR001609 GO:0003774|GO:0005524|GO:0016459
Seca4g06892 1142 Pfam Myosin N-terminal SH3-like domain 10 47 IPR004009 GO:0003774|GO:0005524|GO:0016459
Seca4g06892 1142 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 36 785 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g06892 Seca-Chr4 145171279 145183621 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g06892 116 1097 Myosins gene family AT2G31900 79.022 0.0 1624
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g06892 K10357 - gmx:100817933 2028.06