Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g06890 ATGATGGCAGGCAGTGGACAACTAACAGTTCCTCCAGGCTTCAGGTTCCACCCTACTGATGAGGAGCTTCTTTACTATTACCTGAGGAAGAAAGTTTCTTATGAAGCCATTGATCTTGATGTCATCAGAGAAGTAGATCTCAACAAACTTGAGCCTTGGGACCTCAAAGATAAATGTAGGATTGGGTCAGGACCTCAGAATGAATGGTATTTCTTCAGCCACAAGGACAAGAAATACCCAACAGGAACTCGAACAAATCGAGCAACCACAGCTGGATTTTGGAAAGCAACTGGAAGGGATAAGGCCATATACCACACCAATTCTAAGAGGATTGGGATGAGAAAAACCCTAGTGTTCTACACTGGTCGTGCTCCTCATGGCCAGAAGACTGACTGGATCATGCATGAGTACCGTCTTGATGATGATGACGCAGAGGTTCAGCAGGAAGATGGGTGGGTGGTTTGCAGGGTCTTCAAAAAGAAAAACCAAAATAGAGGTTTCCAACAAGAAATTGAGGAAGAAGAACATTTAACCCACATGAGATCAACAAGTGGTCCTTGCCACCAGATTCTAGAGCCAAAACATCATCACATGCAAGGACTATATGATTGCACCTTTGATGGGGCAATTCACCTTCCACAATTGTTCAGTCCAGAATCAGCTGTAGCACCCACTTCCTCCATGAACGCCATGGACATCCTTGAATGCTCTCAAAACCTGTTGAGGCTCACAACAACTCCTGGATGTGGACTTAACCTTATGCAACAACATGGAGAGAGGTTCAATGGTGACTGGTCATTCTTGGATAAGCTACTAGCATCCCACCATGGCATGGATCATCCACAAACCAAATGTAATAACACTCATACTCAACAACATGCTCCAGCTGCAAATGTTGTGGGAACTTCTGCTCAGAAATTTCCATTTCATTACCTTGGTTGTGAGCCTCATGATATCATGAAATTTTCCAAGTAA 975 0.439 MMAGSGQLTVPPGFRFHPTDEELLYYYLRKKVSYEAIDLDVIREVDLNKLEPWDLKDKCRIGSGPQNEWYFFSHKDKKYPTGTRTNRATTAGFWKATGRDKAIYHTNSKRIGMRKTLVFYTGRAPHGQKTDWIMHEYRLDDDDAEVQQEDGWVVCRVFKKKNQNRGFQQEIEEEEHLTHMRSTSGPCHQILEPKHHHMQGLYDCTFDGAIHLPQLFSPESAVAPTSSMNAMDILECSQNLLRLTTTPGCGLNLMQQHGERFNGDWSFLDKLLASHHGMDHPQTKCNNTHTQQHAPAANVVGTSAQKFPFHYLGCEPHDIMKFSK. 325
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g06890 324 SUPERFAMILY NAC domain 3 160 IPR036093 GO:0003677|GO:0006355
Seca4g06890 324 Pfam No apical meristem (NAM) protein 11 139 IPR003441 GO:0003677|GO:0006355
Seca4g06890 324 ProSiteProfiles NAC domain profile. 10 160 IPR003441 GO:0003677|GO:0006355
Seca4g06890 324 FunFam NAC domain-containing protein 19 164 - -
Seca4g06890 324 Gene3D NAC domain 19 165 IPR036093 GO:0003677|GO:0006355
Seca4g06890 324 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 9 251 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g06890 Seca-Chr4 145126985 145131168 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g06890 2 324 NAC Transcription Factor Family AT1G79580 53.175 5.22e-118 343
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Seca4g06890 NAM 2.1e-38 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g06890 - - vun:114178728 569.696