Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g06870 ATGGCGTCAAAGCCTGTTAAGATGCCAGATTTACATGAGATGCAGAGGAACAACAATTTATCAGAAGAACCTCATAAGACACACAACCACAGTGCTCATAGTTGTGCAAATTCAGGAAATAATTCACCAACTCATCACACAATGGGGAATCAAGCAGAAAAGGATGCCTGCACAACTGAGTATTCAACAAGTGGAGCTGGACATATGGACCATTCAACAAATGGAGCAGGACATATGGACCAGGTGTCTAAAACTGATGCAAAGTTGGCAAGTAACTCTAAACCTCAGAAAATAACACCATCAAGCAAGAACATTTCTGATTTCAGTAATCAACACCAAAGTCCAAGGACAAAGATGCCTTCAAATCCTGATCCTGCAACTCACTCACCACCAGGACTTCCAACAGGAACTACAAAGGGAATGTCTACCCATACAAAGACCACCAATCAAAACACAGGAAGTGGCACTAGCTCCCGCAGTGACAGTTTAGAGAGCACCAGTGCACCCATTAGGCCACATACTGGTGGTGATGTGAGGTGGGATGCAATTAACATGGTTTCCAAGAGTGGCCCTTTCAATCTCAGCCATTTCAGGCTTCTCAAACGCATTGGTTATGGAGACATTGGAAGTGTATATCTTGTGGAACTAAGGGGATCTAATGCCCACTTTGCCATGAAAGTAATGGACAAGGCAGCTCTTATAAGCAGAAATAAGCTTCTGCGAGCACAAACAGAAAGGGAGATTCTTGGACTTCTTGATCACCCCTTCTTGCCAACTTTATATTCTTACTTTGAAACTGATAAGTTTTACTGTTTGGTCATGGAGTTCTGTAGTGGGGGTGATCTTCATTCTCTTCGACAAAAGCAACCAAACAAGTGTTTCACTGAAGAAGCTGCAAGGTTTTATGCTTCAGAGGTTTTGTTGGCTCTAGAGTACCTGCACATGCTTGGCATTGTATACAGAGACTTAAAGCCAGAGAATCTTCTAGTCAGAGATGAAGGGCATATCATGCTCTCAGATTTTGATTTATCACTTCGCTGCTCTGTCAGTCCTACATTAGTCAAGTCTTCACCTACCAATGCAGGCAATGGTGGTGGTGGTGACTCTGGGGGTATGTTGGGTGATGACCAAGCAGTGCAAGGCAATACACAACCTTCAGGCTTTTTCCCTCGCATTTTGCCTTCAAAGAAGAACAGAAAGGCAAAATCAGATTTTGGCCTATTGGTTGGTGGTGGAAATCGTCTTCCTGAACTGATGGCAGAACCCACCAATGTGAGGTCAATGTCATTTGTAGGGACACATGAATATCTTGCTCCTGAGATTATCAAAGGAGAGGGACATGGTAGTGCAGTAGATTGGTGGACTTTTGGGATCTTCTTGTATGAGCTATTGCATGGAACAACACCTTTTAAAGGTGCAGGATATAAAGCCACACTTTTTAATGTTGTTGGGCAGCCATTGAGGTTCCCAGAAACTCCCCAGATCAGTTCAACAGCTCGTGATCTTATAAAAGGATTGTTGGTGAAAGAACCTCAGAAGAGAATTGCATATAAAAGAGGAGCTACAGAAATAAAACAACACCCATTTTTTGAGGGAGTGAATTGGGCTCTAGTTAGAAGTGCCATGCCTCCCCATGTACCAGAACCCATAGACTTTTCCAAGTATGCTAGCAAAGACACAGCACCCCCACCTGAGAAGAAGATGGCAGATAATAATATTGCTCCTGATAAAAAGAGCAACAGTACTACAGATTCTTATGTAGAGTTTGAGTACTTTTAG 1779 0.4289 MASKPVKMPDLHEMQRNNNLSEEPHKTHNHSAHSCANSGNNSPTHHTMGNQAEKDACTTEYSTSGAGHMDHSTNGAGHMDQVSKTDAKLASNSKPQKITPSSKNISDFSNQHQSPRTKMPSNPDPATHSPPGLPTGTTKGMSTHTKTTNQNTGSGTSSRSDSLESTSAPIRPHTGGDVRWDAINMVSKSGPFNLSHFRLLKRIGYGDIGSVYLVELRGSNAHFAMKVMDKAALISRNKLLRAQTEREILGLLDHPFLPTLYSYFETDKFYCLVMEFCSGGDLHSLRQKQPNKCFTEEAARFYASEVLLALEYLHMLGIVYRDLKPENLLVRDEGHIMLSDFDLSLRCSVSPTLVKSSPTNAGNGGGGDSGGMLGDDQAVQGNTQPSGFFPRILPSKKNRKAKSDFGLLVGGGNRLPELMAEPTNVRSMSFVGTHEYLAPEIIKGEGHGSAVDWWTFGIFLYELLHGTTPFKGAGYKATLFNVVGQPLRFPETPQISSTARDLIKGLLVKEPQKRIAYKRGATEIKQHPFFEGVNWALVRSAMPPHVPEPIDFSKYASKDTAPPPEKKMADNNIAPDKKSNSTTDSYVEFEYF. 593
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g06870 592 MobiDBLite consensus disorder prediction 131 169 - -
Seca4g06870 592 SMART serkin_6 197 530 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca4g06870 592 MobiDBLite consensus disorder prediction 1 176 - -
Seca4g06870 592 SUPERFAMILY Protein kinase-like (PK-like) 186 565 IPR011009 -
Seca4g06870 592 FunFam Serine/threonine-protein kinase AGC1-5 195 280 - -
Seca4g06870 592 Gene3D Phosphorylase Kinase; domain 1 195 280 - -
Seca4g06870 592 Gene3D Transferase(Phosphotransferase) domain 1 424 548 - -
Seca4g06870 592 MobiDBLite consensus disorder prediction 31 123 - -
Seca4g06870 592 Gene3D Transferase(Phosphotransferase) domain 1 281 350 - -
Seca4g06870 592 MobiDBLite consensus disorder prediction 574 592 - -
Seca4g06870 592 FunFam serine/threonine-protein kinase D6PK-like 281 348 - -
Seca4g06870 592 ProSitePatterns Serine/Threonine protein kinases active-site signature. 318 330 IPR008271 GO:0004672|GO:0006468
Seca4g06870 592 CDD STKc_phototropin_like 195 551 - -
Seca4g06870 592 ProSiteProfiles Protein kinase domain profile. 197 530 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca4g06870 592 FunFam Serine/threonine-protein kinase AGC1-7 423 548 - -
Seca4g06870 592 PANTHER FLIPPASE KINASE 1-RELATED 25 556 - -
Seca4g06870 592 Pfam Protein kinase domain 423 530 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca4g06870 592 Pfam Protein kinase domain 198 350 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca4g06870 592 MobiDBLite consensus disorder prediction 16 30 - -
Seca4g06870 592 MobiDBLite consensus disorder prediction 552 592 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g06870 Seca-Chr4 144273497 144277223 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g06870 163 592 AGC Kinase Gene Family AT1G79250 73.951 0.0 669
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK AGC_RSK-2 Seca4g06870 Pkinase 3.2e-37 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g06870 - - gmx:100819001 867.07