Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g06857 ATGGCCGCCGCCACCGCAGCACCCGCCGCTCCGACGCGCCAGCTGTCACAGAAGGAGGTGGACATCCAGATGATGTTGGCCGCCGACGTTCACCTCGGCACCAAAAACTGTGACTTTCAGATGGAACGATATGTCTTCAAGCGCCGCACCGATGGTATTTACATAATTAACCTTGGGAAGACATGGGAGAAGCTCCAACTTGCTGCTAGGATTATCGTCGCCATTGAGAACCCTCAGGATATCATTGTTCAGTCGGCCAGGCCTTATGGTCAGAGAGCAGTTCTAAAGTTTGCTCAATACACTGGTGCTCATGCAATAGCAGGAAGGCACACTCCTGGAACATTCACTAATCAGATGCAGACATCCTACAACGAGCCACGCCTTCTCATTCTAACTGATCCAAGAACAGATCATCAGCCTATTAAGGAAGGAGCTCTTGGTAATATACCAACTATTGCTTTTTGTGACACTGATTCTCCAATGCGCTATGTTGATGTTGGGATTCCTGCTAATAACAAGGGAAAACATAGCATTGGTTGTCTCTTTTGGCTATTAGCAAGGATGGTACTGCAGATGCGGGGTACTATTCGTCCAGGGCATAAGTGGGACATAATGGTGGATTTATTCTTCTATAGAGAACCTGAGGAAACCAAGCCACAAGAGGAAGATGAAGCACCAGCTGCTCAAGATTTTGCCATTTCAGACTTCAATGCTGCTGGTATTGGCAGCTTCCCTGCTGATGGCCAATGGCCTGCTGCTGCACTTGAACAACCCTGGACTGAAGAAGTTCCACAACCAATCCCAGCAGCTCCTGGTAACTGGGCCCCAGAAGCTGGAGATTGGGGTGAGTCTGTTCCAGCTCCACAAGCTGTGCCTGCAACCCAAGCTGTTCCTGCAACTCCAGCTGTTCCTGCCCCCAGCTGGGATTAG 930 0.4989 MAAATAAPAAPTRQLSQKEVDIQMMLAADVHLGTKNCDFQMERYVFKRRTDGIYIINLGKTWEKLQLAARIIVAIENPQDIIVQSARPYGQRAVLKFAQYTGAHAIAGRHTPGTFTNQMQTSYNEPRLLILTDPRTDHQPIKEGALGNIPTIAFCDTDSPMRYVDVGIPANNKGKHSIGCLFWLLARMVLQMRGTIRPGHKWDIMVDLFFYREPEETKPQEEDEAPAAQDFAISDFNAAGIGSFPADGQWPAAALEQPWTEEVPQPIPAAPGNWAPEAGDWGESVPAPQAVPATQAVPATPAVPAPSWD. 310
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g06857 309 NCBIfam 30S ribosomal protein S2 17 213 IPR005707 GO:0003735|GO:0006412|GO:0015935
Seca4g06857 309 ProSitePatterns Ribosomal protein S2 signature 2. 126 150 IPR018130 GO:0003735|GO:0005840|GO:0006412
Seca4g06857 309 PRINTS Ribosomal protein S2 signature 143 154 IPR001865 GO:0003735|GO:0005840|GO:0006412
Seca4g06857 309 PRINTS Ribosomal protein S2 signature 126 143 IPR001865 GO:0003735|GO:0005840|GO:0006412
Seca4g06857 309 PRINTS Ribosomal protein S2 signature 164 178 IPR001865 GO:0003735|GO:0005840|GO:0006412
Seca4g06857 309 PRINTS Ribosomal protein S2 signature 101 118 IPR001865 GO:0003735|GO:0005840|GO:0006412
Seca4g06857 309 PRINTS Ribosomal protein S2 signature 22 40 IPR001865 GO:0003735|GO:0005840|GO:0006412
Seca4g06857 309 PRINTS Ribosomal protein S2 signature 52 61 IPR001865 GO:0003735|GO:0005840|GO:0006412
Seca4g06857 309 Gene3D - 21 227 - -
Seca4g06857 309 PANTHER 40S RIBOSOMAL PROTEIN SA 12 292 IPR005707 GO:0003735|GO:0006412|GO:0015935
Seca4g06857 309 FunFam 40S ribosomal protein SA 21 227 - -
Seca4g06857 309 SUPERFAMILY Ribosomal protein S2 17 207 IPR023591 -
Seca4g06857 309 Hamap 40S ribosomal protein SA [rps-0]. 9 284 IPR027498 GO:0003735|GO:0006412|GO:0015935
Seca4g06857 309 Pfam Ribosomal protein S2 25 120 IPR001865 GO:0003735|GO:0005840|GO:0006412
Seca4g06857 309 CDD RPS2 25 191 IPR001865 GO:0003735|GO:0005840|GO:0006412
Seca4g06857 309 MobiDBLite consensus disorder prediction 257 309 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g06857 Seca-Chr4 143971612 143974294 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g06857 1 287 Cytoplasmic Ribosomal Protein Gene Family AT3G04770 72.664 1.52e-150 421
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g06857 K02998 - gmx:100786575 524.242