Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g06854 ATGCCAGCTTTGATCTCAGCGAAGTTTCTTTCGCTTGTTGGAGAGTCATTCCCCATGAGAAGGGCTTTGGCCTCTTCAAGGTTTGCTTGGTTTCACAGTAGTATCCATTGTATGAGCCAGGTGGAACCCCACCATGGTCCCCTCACCCTTTCTAGCGTTGCTTTCCAAAGTGAAGTTGAACCCAGGAACAGAGGCAAACCAAACAAGCTTAAGCCATTAGGTTCCTCCTCTGAGGTTCTCAAGAGCAAAGGAAAGCCCTTTGGCATTAATCATAAGAAAGCTGTTGGGGTTAGAGAGAAACAGCAAATAGAATCTGCCCCATTTGCTGCTAAGTCATTTTCAGAACTTGGCATTCCACATGTGTTGATTGAGAGGCTAGAAAATGAGGGTTTCAATGTTCCAACAGAAGTTCAGTCTGCTGCTGTTCCAACCATTCTGAAGAACCATGATGTTATAATTCAGTCATACACAGGTTCAGGGAAAACACTGGCTTATCTCCTTCCTATACTATCTGTTATTGGGCCACTAAAGGGAAAAATTCCTGAAGGAAATGGTGATGGTGGTGAGGCTGGGAAGAAATTGGGAATAGAAGCTGTGATTGTTGCTCCTTCTAGGGAGCTTGGAATGCAGATAGTGAGGGAGTTTGAAAAGATACTAGGAATGGATAACAGGAAAGTGGTTCAACAGCTTGTGGGAGGTGCAAACCGAACAAGGCAGGAAGAAGCTCTCAAGAAAAATAAACCTGCCATTGTTGTTGGCACACCTGGAAGGATAGCTGAGCTCAGTGCAGCCGGGAAACTTCGCACCCATGACTGTCGTTATTTGGTATTAGATGAAGTTGATGAGCTCCTGTCTTTCAATTTCCGGGAAGACATGCACCGGATATTGGAGCACGTAGGGAGGAGATCAGGTGCAGACCCAAACTCAAATGCTAAAAGGGCTGAGCGCCAGTTGATTATGGTTTCTGCAACTGTGCCATTTTCTGTTGTAAGGGCAGCTAGGAGCTGGGGTTGTGACCCGCTTCTTGTCCAAGCTAAGAAAGTCGTCCCGCTTGAAACCGTGTCTCCCTCTGAGCCTGTCACTTTGTCAAGGTCTTCACCCAGCTCAAGTCCTAACTCATCTATGCCATCTCAGGGAGCAATAGAGAGTCTCCCTCCAGCATTGAAACACTATTACTGTGTGGTAAGGTTGCAGCACAAAGTTGATACATTGAGAAGGTGTATTCATGCACTAGATGCCAAATTTGTGATAGCTTTCATGAACCATACTAAACAACTAAAGGATGTTGTCTTCAAGCTGGAGGCCCGTGGGATGAAAGCTGCGGAGTTACATGGGGATCTTGGGAAGCTTGCTAGGTCAACCACTCTAAAGAAATTCAAGAATGGTGAGGTGAGAGTTCTGGTGACAAATGAATTATCAGCAAGGGGTTTGGATGTGGCAGAGTGTGATCTTGTGGTTAATCTGGACTTACCTACAGATTCAATTCACTATGCACACCGAGCTGGCCGAACTGGCCGGCTTGGTAGGAATGGTACAGTGTTAACCATATGTGAGGAGTCAGAAGTGTTTGTTGTGAAGAAATTGCAGAAACAGCTTGGAATACCAATACCATGCTGTGATTTTGCAGAGGGAAAGCTTCTTGTCACTGAAGAAGAGAAAACACTAAGCACTTCTAGGGGATGA 1683 0.4557 MPALISAKFLSLVGESFPMRRALASSRFAWFHSSIHCMSQVEPHHGPLTLSSVAFQSEVEPRNRGKPNKLKPLGSSSEVLKSKGKPFGINHKKAVGVREKQQIESAPFAAKSFSELGIPHVLIERLENEGFNVPTEVQSAAVPTILKNHDVIIQSYTGSGKTLAYLLPILSVIGPLKGKIPEGNGDGGEAGKKLGIEAVIVAPSRELGMQIVREFEKILGMDNRKVVQQLVGGANRTRQEEALKKNKPAIVVGTPGRIAELSAAGKLRTHDCRYLVLDEVDELLSFNFREDMHRILEHVGRRSGADPNSNAKRAERQLIMVSATVPFSVVRAARSWGCDPLLVQAKKVVPLETVSPSEPVTLSRSSPSSSPNSSMPSQGAIESLPPALKHYYCVVRLQHKVDTLRRCIHALDAKFVIAFMNHTKQLKDVVFKLEARGMKAAELHGDLGKLARSTTLKKFKNGEVRVLVTNELSARGLDVAECDLVVNLDLPTDSIHYAHRAGRTGRLGRNGTVLTICEESEVFVVKKLQKQLGIPIPCCDFAEGKLLVTEEEKTLSTSRG. 561
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g06854 560 MobiDBLite consensus disorder prediction 356 380 - -
Seca4g06854 560 Gene3D - 385 541 IPR027417 -
Seca4g06854 560 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 142 343 IPR014001 -
Seca4g06854 560 SMART ultradead3 130 363 IPR014001 -
Seca4g06854 560 MobiDBLite consensus disorder prediction 59 83 - -
Seca4g06854 560 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 197 528 IPR027417 -
Seca4g06854 560 CDD SF2_C_DEAD 388 517 - -
Seca4g06854 560 Pfam Helicase conserved C-terminal domain 403 508 IPR001650 -
Seca4g06854 560 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 111 139 IPR014014 GO:0003724
Seca4g06854 560 Pfam DEAD/DEAH box helicase 135 329 IPR011545 GO:0003676|GO:0005524
Seca4g06854 560 Gene3D - 85 345 IPR027417 -
Seca4g06854 560 SMART helicmild6 427 508 IPR001650 -
Seca4g06854 560 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 403 547 IPR001650 -
Seca4g06854 560 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE 47, MITOCHONDRIAL 28 546 - -
Seca4g06854 560 CDD DEADc 122 344 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g06854 Seca-Chr4 143799003 143801166 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g06854 112 536 Eukaryotic Initiation Factors Gene Family AT3G19760 24.413 4.82e-42 154
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g06854 - - gmx:100812968 941.799