Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g06831 ATGTCGAATCATCCGGCGCTTCCGCGGCTCCCCGCCGTGACAGCGCGTTGCGTCGGTTGCCGTACATACCTGTCTGCGGCGCCGGGGGTGATGGAGCTGCCTTGCCCTAACTGTCAAATGCGGCAAACTTTCCCCAGCGCCGTCGATCCCTCCGCGGCACGGCTTCGCTGCTTCACCTGCAAGGCACTCGTCAGCGTGCCTCCTGGCCTCGCGAGTTTCCCTTGCCCGCAGTGTAAGGTTCAGCTCGACGTCCATGTTGACGATGAAGACGTCAATGAGCTAGTTGTTGAAGTGGAGCGGGTTGAAGATGATGATGGTGGTATGGCTGGAGAAACATTTACAGATTATCGACCAGCAAAGTTGTCTATTGGGCTTCCGCACCCAGATCCGGTTGTGGAGACATCTTCCTTGTCTGCAGTGCAGCCGCCTGAGCCTACTTATGATCCAAAGATTAAAGATGATTTGGAAAGTTCAAAGGCTTTGTCATGCTTGCAGATTGAGACATTGGTCTATGCTTGTCAGAGACACCTTCAACACCTTCCAGATGGTACTAGGGCCGGATTCTTTATTGGAGATGGAGCTGGAGTAGGTAAAGGTCGAACAATTGCAGGGATAATTTGGGAGAACTGGCATCATGGGAGGAGAAAAGCCTTGTGGATTTCTGTTGGTTCAGATTTGAAGTTCGATGCCAGAAGAGACCTAGATGATATGGGTGCAACTTGCATTGAAGTGCATGCTTTGAACAAGCTTCCTTATTCTAAGCTTGAATCAAAGTCTGTTGGGGTAAGGGAGGGAGTTATTTTCTTGACATACAGTAGCCTCATAGCATCTTCTGAGAAAGGTCGTACTCGTCTCCAACAGCTTGTGCAGTGGTGTGGATCTGGGTTTGATGGTCTTATCATTTTTGATGAGTGTCATAAAGCCAAAAATTTGGTCCCTGAACATGGTAAGAAACCAACACGAACTGGTGAAGCAGTACTTGATATCCAGGCTCGACTACCTGAAGCTCGTGTTGTTTATTGCTCAGCTACTGGTGCATCTGAACCTCGCAATATGGCTTATATGGTTCGACTTGGACTTTGGGGAACTGGGACTTCTTTCTGTGATTTTGGTAAATTTTTAGGCGCTCTTGAAAAAGGAGGTGTTGGAGCTCTAGAACTAGTTGCAATGGACATGAAAGCAAGGGGGATGTATTTATGCCGTACACTTAGCTACAAGGGTGCTGAGTTTGAAATTATTGAAGCACCGTTACAAGATGAAATGCTGGATGTGTATAAAAAGGCTGCAGAATTTTGGGTAGAATTGCGTGAGAAATTGCTGTCTGCCATTGCCTTTCTAAATGAGAAACCTAATTGTGGACGACTATGGAGTTTATACTGGGCAAGCCACCAGCGCTTCTTTAGACACTTGTGTATGTCTGCTAAAGTCCCTACTGCGGTCAGACTAGTGAAGCAAGCGTTAATGGAGGATAAGTGTGTAGTCATAGGTCTGCAGAGTACGGGTGAAGCAAGAACAGAGGAAGCTGTTTCAAAATATGGTTCTGAACTTGATGACTTTGTTTCTGGACCTCGTGAATTGCTGCTAAAATTTGTTGAAGAAAATTTTCCATTGCCTGAAAAGCCTGAACATCTCCCAGAGGATGGTGTGAAGGAGCTTCAAAGGAAGAGGCACTTGGCAAGTCCTGATGTTTCAGTAAAAGGAAGAGACAGAAAAGTAGCTAAGTTGCAGCATCCTAGTGATGTTGAAAGTGATGAAGAATCTGAAACTGCTTCTGCTCTTGAATCTTCTGATTCTGATTACGGACCAGAAGGGGATGAAAGTGCTGCCTCTGCTCTTGAATCTACTGACTCTGATTATGATGAGTTTCAGACATGTGAAATTTGCAGTACTGAAGAGGAAAGTGAAAACTTGTTGCAATGCTCCTGCTGTGGTAAATCATTCCATCAATCATGCTTGGTTCCCCAAATTGGCAATGTAGTTCCCAAGGAATGGTCGTGTCATTTGTGCAAGGAAAAAACAGATGAATTTCTCCATGGAAGACATGCCTACATAACTGAGCTCCAAAAGAGGTATGACATAGCCTTTGAGTGCAAGACAAAAATATTAGAGATGATTCATGCTTTGGATCTTCCAAATAATCCATTGGATGATATTATTGACCAGTTAGGAGGCCCTGACAAAGTTGCAGAAATAACAGGAAGGAAAGGGATGCTTGTGAGGGCCCCTAGTGGAAAGGGTGTGACTTATTGGGCTCGTAATATAAAAGATGTCCCTATGGAAATGGTCAACATGCATGAAAAGCAGCTCTTTATGGATGCAAAGAAGTTAGTAGCGATTATCTCTGAAGCTGGATCAGCTGGTGTTTCATTGCAGGCAGACAGAAGAGTGAGAAATCAGAAAAGAAGGGTTCATTTAACTCTTGAACTTCCTTGGAGTGCGGACCGAGCAATTCAGCAGTTTGGAAGAACTCATCGGTCAAATCAAGCTTCAGCACCAGAATACAGGTTTCTATTTACTAACCTTGGCGGAGAACGCCGATTCGCATCAGTTGTTGCGAAGAGATTAGAATCTCTTGGTGCTTTGACTCAGGGGGACCGCAGGGCTGGACCTTCATTAAGTGCTTATAATTATGATAGTCCTTATGGAAGGAGGGCTCTGATGATTCTGTACAGAGGAATAATGGAGCAGGATTCTCTTCCCATTGTACCTCCAGGATGCTTATCTGACAGACCAGATACAACCCAAGGTTTTATTATGCGGGCAAAATCTGCTCTTGCATCTGTTGGAATTGTTAGGGACACCATTCTTGGAGGTGATGGAGATCCTGGAAGGTTATCTGGTCACATTACTGATTCAGATATGTATGATATTGGGCGATTCCTCAACCGGCTTTTGGGATTGACTCCTGAAACTCAAAATGGGCTATTTGAGTTATTTGGGAATATCTTGGATCTTCTTATTCAAAATGCTCGCATTGAAGGTAACCTTGACACAGGCATTGTTGACTTGAAAGCTAATGCCATTGAACTGAAAGGGACTCCAAAGACAGTCCATGTTGATCAAATGAGTGGGGCTTCAACTGTTCTATTCACATTCATCTTGGATCGTGGGACCTCATGGGAGTTGGCAAATACCATGCTGAATGAGAAGCAGAAGGATGGGCTTGGTTCATCCAGTGATGGTTTCTACAAGTCCAAGAGGGAATGGCTGGGAAGACCTCGTTTCATTTTGGCACTTGAAAGGTATCATTCTGGATTCAGTTTTCTTTTTTACCCATCAATTTCCTATAATTATAGGGAGATGCACCTGGCTGAATTAAAAAGTAAATATATAAAAGTTTCATCTTCAGACAAGGCTCAAACTGGTTGGGAATATGAATATATAGCTTCATCGAAACAGTGCATGCATGGTCCCAATTGTGGGATTGGCAACTTCTGTACAGTTGGCTTAAGACGACGGGAAGTAAATGTCTTGGGTGGCGTCATTCTTCCTCTTTGGGGAACCATAGAAACTGCCCTTTCTAAACAGGCCCATCTAATCCATAGGAGGTTGCGTGTTGTTCGCGTAGAAACTACATCAGATAACCCACATGTAGTCGGGCTTCTTGTTCCTAATGCAGTAGTTAAAACTGTGCTTCAAGGTTTCTCTCTTTCTCTCTCTCTCTCTCCACCCCTACCGCCTATTCTTGAAAGGACACCTGCACACTATGGACTTGCATTCATGATTTGCTTTCATCACAGAAAATGGACATATTCCCAATTAAACTGA 3768 0.4443 MSNHPALPRLPAVTARCVGCRTYLSAAPGVMELPCPNCQMRQTFPSAVDPSAARLRCFTCKALVSVPPGLASFPCPQCKVQLDVHVDDEDVNELVVEVERVEDDDGGMAGETFTDYRPAKLSIGLPHPDPVVETSSLSAVQPPEPTYDPKIKDDLESSKALSCLQIETLVYACQRHLQHLPDGTRAGFFIGDGAGVGKGRTIAGIIWENWHHGRRKALWISVGSDLKFDARRDLDDMGATCIEVHALNKLPYSKLESKSVGVREGVIFLTYSSLIASSEKGRTRLQQLVQWCGSGFDGLIIFDECHKAKNLVPEHGKKPTRTGEAVLDIQARLPEARVVYCSATGASEPRNMAYMVRLGLWGTGTSFCDFGKFLGALEKGGVGALELVAMDMKARGMYLCRTLSYKGAEFEIIEAPLQDEMLDVYKKAAEFWVELREKLLSAIAFLNEKPNCGRLWSLYWASHQRFFRHLCMSAKVPTAVRLVKQALMEDKCVVIGLQSTGEARTEEAVSKYGSELDDFVSGPRELLLKFVEENFPLPEKPEHLPEDGVKELQRKRHLASPDVSVKGRDRKVAKLQHPSDVESDEESETASALESSDSDYGPEGDESAASALESTDSDYDEFQTCEICSTEEESENLLQCSCCGKSFHQSCLVPQIGNVVPKEWSCHLCKEKTDEFLHGRHAYITELQKRYDIAFECKTKILEMIHALDLPNNPLDDIIDQLGGPDKVAEITGRKGMLVRAPSGKGVTYWARNIKDVPMEMVNMHEKQLFMDAKKLVAIISEAGSAGVSLQADRRVRNQKRRVHLTLELPWSADRAIQQFGRTHRSNQASAPEYRFLFTNLGGERRFASVVAKRLESLGALTQGDRRAGPSLSAYNYDSPYGRRALMILYRGIMEQDSLPIVPPGCLSDRPDTTQGFIMRAKSALASVGIVRDTILGGDGDPGRLSGHITDSDMYDIGRFLNRLLGLTPETQNGLFELFGNILDLLIQNARIEGNLDTGIVDLKANAIELKGTPKTVHVDQMSGASTVLFTFILDRGTSWELANTMLNEKQKDGLGSSSDGFYKSKREWLGRPRFILALERYHSGFSFLFYPSISYNYREMHLAELKSKYIKVSSSDKAQTGWEYEYIASSKQCMHGPNCGIGNFCTVGLRRREVNVLGGVILPLWGTIETALSKQAHLIHRRLRVVRVETTSDNPHVVGLLVPNAVVKTVLQGFSLSLSLSPPLPPILERTPAHYGLAFMICFHHRKWTYSQLN. 1256
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g06831 1255 ProSiteProfiles Zinc finger PHD-type profile. 622 672 IPR019787 -
Seca4g06831 1255 FunFam Protein strawberry notch homolog 2 157 357 - -
Seca4g06831 1255 MobiDBLite consensus disorder prediction 553 615 - -
Seca4g06831 1255 SMART PHD_3 624 670 IPR001965 -
Seca4g06831 1255 Pfam C-terminal domain on Strawberry notch homologue 713 1002 IPR026937 -
Seca4g06831 1255 ProSitePatterns Zinc finger PHD-type signature. 625 669 IPR019786 -
Seca4g06831 1255 Gene3D - 156 357 IPR027417 -
Seca4g06831 1255 Pfam PHD-finger 625 672 IPR019787 -
Seca4g06831 1255 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 768 873 IPR027417 -
Seca4g06831 1255 PANTHER STRAWBERRY NOTCH-RELATED 16 1216 IPR026741 GO:0006355
Seca4g06831 1255 ProSiteProfiles Zinc finger RING-type profile. 625 670 IPR001841 -
Seca4g06831 1255 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 141 369 IPR027417 -
Seca4g06831 1255 Pfam P-loop containing NTP hydrolase pore-1 126 426 IPR039187 -
Seca4g06831 1255 SUPERFAMILY FYVE/PHD zinc finger 614 675 IPR011011 -
Seca4g06831 1255 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 569 680 IPR013083 -
Seca4g06831 1255 MobiDBLite consensus disorder prediction 553 584 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g06831 Seca-Chr4 143014858 143046038 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Seca4g06831 AAA_34 8e-135 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g06831 K26273 - gmx:100808670 1820.44