Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g06829 ATGGCCGTGAATCTGACACAAGGGGCGATCGAGACTACGTGCAGCGACAACTTCTCTTCGGAGGAGTTGCAGCCGGTACTGCAGATTATCGAATTGAAGTTGGTGCAGTCGCAGCAGAACAGCGCCGTCGAGAAGTACCGTCTCATGGTCTCTGACGGTTCGTATTATCAGCAAGGGATGCTCGCCACGATGAAGAACGAGTTGGTCCGTTCTCGAAGCTTGCAGAAAGGTTCCGTTGTTAGGCTCACTCGGTTCATCTGCAACGTTGTCCAAGGCCGCAAGATTATTATCATCATTGACCTAGATGTTTTACTGGACAAATGTGACCTGATTGGAGAACCTGTTGCACTACCAAAAAATACATCTGCGGAAGCTGCCACTGGTCAATCAAGAATAACCTCTGGGAATTCACAGTCTTTAAATGTCCATCATAAGTGGATGTTTTTTTTGCTTATAATTGAGTCCGGAGGGAGTAGTTCACATGCAAGTGGCATGGCTGTCAAACCAAATATGTCTGGGCCTTCACCGTATCATCCAAAAGTGAATCTTCCTTCTAATAGTGTTCATTCTAGCAGTTCTGACTTTGTAAGATATGGTAATATGAATGGATTTCTGATGAATGAACTCTTTGATCAGACACCTCCTTCCTTCTTCACTCTGGTTATGTATGCTGAGTTAGACCGGACTCTTATTGAAAGAGAAGAAGCCCTAGTGAACAAGGTGGCTGAAGTCCCTCTTGTGGCATCCGTCTCGTTCGTTTGA 762 0.4554 MAVNLTQGAIETTCSDNFSSEELQPVLQIIELKLVQSQQNSAVEKYRLMVSDGSYYQQGMLATMKNELVRSRSLQKGSVVRLTRFICNVVQGRKIIIIIDLDVLLDKCDLIGEPVALPKNTSAEAATGQSRITSGNSQSLNVHHKWMFFLLIIESGGSSSHASGMAVKPNMSGPSPYHPKVNLPSNSVHSSSSDFVRYGNMNGFLMNELFDQTPPSFFTLVMYAELDRTLIEREEALVNKVAEVPLVASVSFV. 254
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g06829 253 Pfam Replication factor-A protein 1, N-terminal domain 5 104 IPR007199 GO:0003677|GO:0005634|GO:0006260
Seca4g06829 253 SUPERFAMILY Nucleic acid-binding proteins 1 112 IPR012340 -
Seca4g06829 253 Gene3D - 3 118 IPR012340 -
Seca4g06829 253 PANTHER RPA-RELATED PROTEIN RADX 5 127 IPR040893 GO:0003697
Seca4g06829 253 FunFam Replication protein A subunit 4 118 - -
Seca4g06829 253 CDD RPA1N 8 94 IPR007199 GO:0003677|GO:0005634|GO:0006260
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g06829 Seca-Chr4 142992742 142994679 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g06829 1 236 Core DNA Replication Machinery Family AT4G19130 32.510 3.82e-30 116
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g06829 K07466 - gmx:100778597 215.312