Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g06827 ATGGCTATGGTTTCTGTTGCTTTCCACAAGATCAATAGTATCTGTGAGAGGAGGCAAAATTGGCGTTTGAGAGTTAAGCTGGTTAGGGTATGGAGTATGTGTGCTGTTGCTACCCCAAGTGACCCATACGCAATGCAGATGGTGTTTGTAGATGAAGAGGGAGGGAAGATAGAGGCTATAGTTCAGAGGCAATTTATGAAGAAATTTTCACAGTGCCTGGTGGAGGGAGAGGTGTACAAGATATCCAACTTTGGTGTCTCTTCTAATGGAGGCAAGTTTAGGGCTTCTGGTCATGACTACAAGCTGTCTTTCACAGCATGTACTCAAGTGACAAAGTGCGTTGGAGTATCTATACCTGGGTTAGGGCTCTCTCTTTTGAAGACATCTGATCTAAAGAAAACGAGGGGCCATTCGGTCTACCTTGTGGATTTTATGGGAGTGGTAACTGTTGTCTCAGAGGAGCTTAATATCAACAAGGAGGGAAGGAAGACACGTTTAATGTTGATTGACTTAGTTGACGAATTTGGTAAGATCCGCTTTGCTGTGTTTGGGGATTTCATTAATGTTGTTATGGAGTTCCTTGCTCTTGAAGATCATGGGTTTCCTGTTGTTATAATCCAATTCGCAAGGGTAAACCTCTATAAAGGTGAGGTTGGGATTCAAAATGTAATGAATGCAACAAAGATTTTGTGGAATCCTCATATTCCATTGGCAGTGGAATTTAAAAATAGCCTAGCTGTCCATGAAATTGAAACTAACGTTTCTATCTCAACTATCACTGATCGGCGCCAAGCTCCATCCATGAGGGATGAGTTTCTTAAACTATATCCCAAGAAATCCATTGGGCAACTTTATGATATGCTTGAGGAAGGTCACTACATAATATTAGCCACAGTGAGTGAGATTGTTGATGACTTCAAGTGGTGGTACATGGCATGTTCCTGCATGAAAGGTGTCTCTTTTGTTGAAGGACTCCCATTTTGTGAAGATTGTAACAGATATGTTTTTGATATGACCCCAAGGTACAAAGTCAAGCTGTTGGTGTGTGATGGGAATGATAATGCATTTTTCATTCTTTGGGATTTAGACTGTTATTATCTTGTGAATAAAACCTGCCGACAGATGCTGGATGATATTGAGGGTCAGCCTAAGGGGCTTTTACCTGAAGAAATTAGGAACTTAGTGGGGAAGGAGATGCTTTTTCGAATAGAAAATAGCCACGAAGATTTGCTTAGCTTTTCTGACACTTATAAGATTAAGAAGGTGTGCTGTGATGTGGATATAGTTGCTCAATATAAAGAAGAAGTTGCTGATGAAACTCCCCTAAAGTTGAAGTTCGCTCCTGCATTCCCCAAGTTAGCCGAGGCTGATGCAAATGGTGAAGGGCTTGAACTGTCCACCTGCTGCAAAACTATTGCAACTGAGCTTGAGATCACCCCTCCCTCATGTGTTACTTCTTCAGCCAATGGGGAGGAAAGTGGGAGCCTTGGTAAAAGGGATGTTGAGGACCAAGATGAAGCTCCCCTAAAGAGGAAGAAGAGGTCCAGGGTTCGAGCAGTTAAGGACCTATCTCCATACTCTGAACCATGGTTCATAGAAGTGAAGGTAATTAGGATTTGGACAACACCTATATGTAGCAATGCTTCCCGTGTGAACACTGTGGAGATGGTCTTCATTGATGCTGAGGGAACTAAGATCCAAGGATCTGTCACAAGGGATATCTTAAGGCAGAAGCGGCTGGACATGGATGAAGGTGGCTGTTATGAAGTAAATGAAGCACTGGTCGTTCCAAATGAGGGAAACGACAGACCTACTCAACATGCTTACAGATTGGTACTCCAAGGCAGGTCTTTAATCAAGAAAATAAAGCCCCTTTGCTTTAATGCTCTCGGCCTCTCCCTTATGACTTCAGCTGCTCTTGCAGCTTAG 1929 0.4272 MAMVSVAFHKINSICERRQNWRLRVKLVRVWSMCAVATPSDPYAMQMVFVDEEGGKIEAIVQRQFMKKFSQCLVEGEVYKISNFGVSSNGGKFRASGHDYKLSFTACTQVTKCVGVSIPGLGLSLLKTSDLKKTRGHSVYLVDFMGVVTVVSEELNINKEGRKTRLMLIDLVDEFGKIRFAVFGDFINVVMEFLALEDHGFPVVIIQFARVNLYKGEVGIQNVMNATKILWNPHIPLAVEFKNSLAVHEIETNVSISTITDRRQAPSMRDEFLKLYPKKSIGQLYDMLEEGHYIILATVSEIVDDFKWWYMACSCMKGVSFVEGLPFCEDCNRYVFDMTPRYKVKLLVCDGNDNAFFILWDLDCYYLVNKTCRQMLDDIEGQPKGLLPEEIRNLVGKEMLFRIENSHEDLLSFSDTYKIKKVCCDVDIVAQYKEEVADETPLKLKFAPAFPKLAEADANGEGLELSTCCKTIATELEITPPSCVTSSANGEESGSLGKRDVEDQDEAPLKRKKRSRVRAVKDLSPYSEPWFIEVKVIRIWTTPICSNASRVNTVEMVFIDAEGTKIQGSVTRDILRQKRLDMDEGGCYEVNEALVVPNEGNDRPTQHAYRLVLQGRSLIKKIKPLCFNALGLSLMTSAALAA. 643
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g06827 642 Pfam Replication factor-A C terminal domain 294 433 IPR013955 -
Seca4g06827 642 Pfam Domain of unknown function DUF223 47 114 IPR003871 -
Seca4g06827 642 Gene3D - 117 255 IPR012340 -
Seca4g06827 642 Gene3D - 7 113 IPR012340 -
Seca4g06827 642 Gene3D - 515 621 IPR012340 -
Seca4g06827 642 PANTHER OS03G0429900 PROTEIN 9 407 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Seca4g06827 642 Gene3D - 267 438 IPR012340 -
Seca4g06827 642 MobiDBLite consensus disorder prediction 483 514 - -
Seca4g06827 642 SUPERFAMILY Nucleic acid-binding proteins 7 116 IPR012340 -
Seca4g06827 642 CDD RPA1_DBD_C 293 438 IPR047192 -
Seca4g06827 642 MobiDBLite consensus disorder prediction 495 512 - -
Seca4g06827 642 SUPERFAMILY Nucleic acid-binding proteins 519 621 IPR012340 -
Seca4g06827 642 CDD RPA1_DBD_B_like 143 245 - -
Seca4g06827 642 SUPERFAMILY Nucleic acid-binding proteins 125 248 IPR012340 -
Seca4g06827 642 SUPERFAMILY Nucleic acid-binding proteins 276 426 IPR012340 -
Seca4g06827 642 CDD RPA1_DBD_A_like 22 110 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g06827 Seca-Chr4 142929793 142934461 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g06827 1 412 Core DNA Replication Machinery Family AT5G08020 22.350 1.23e-11 65.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g06827 - - lja:Lj6g3v0884310.1 356.295