Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g06825 ATGACAGATGAATTGCGATCACAAGGCATGTTTGGGAAACAAGAGGATGGTGGAAGAGAGGCTCAAATAGAAGAGGGTGGTATAAATAGAGAATTTTATCATATTTTTGATCCAAGAGGCTTAAATATCTTATTTAAATCGGGTAAATGGATTGTAGCGGGGAATGAAAATAAGGGTGATAATGGTGGGTCTGACAAGATGAGAGAGAAAGGAGAAGGACCAAATGGTCATGGGCTTAGTGGAAGAAAAATAATAAGGAAGCAACTTATAGATGCAGGTTGGATAGTTGGGTGCTTATTCACATACCAAAACGACTATAATCAAGAAGTGTATGTTAATCTTGATGGAAGCAGGGCTTTCACATCAATTATCAAGGCTTACCATACACTTAGGAAGCATTATAAAGATGGTAACGGTGAAGGTAAGTTTTACGAACAAGGTTTCCAACTCATACCAATATCTGAAATGACTATCAATATTTCAAGGGAAAAAGAAAGCATAAATGAAGGAGAATTCGAGCATATAGGGGAAAAGGTTGCAACCACAGTAGATGGAGTGAATAGGAAAGTTAATAAAGAAACATTAGGTTCTGGTACAACAGGTAATAAGCAAAAGAAGGGGAAAACTAGAAGGAAATGGCCACTTGTTGAGGAGGGAGAAGATGATGGCACAACACCCTATAAAGTGTCAAATCAGAAGCAAAAGAACACAAAAACTAAGAGGCGACGTCAAGCTCCATTAGTTTATAATTATGAGATAGATTCAGATGCAAGCTCAGAAGAGGATTTGTATGAACCGTACAAAGGGAAACGGACTGTGTTTTCCTGGATGATTGATTTGGGAACATTCCAAGAGAATTCAAAGGTTTATTATTTGAAAAACCAAAGGAAAACTTCAGTGGGAAAGATCACTAGAGATGGCATTCATTGCAATTGTTGTAATGAAATCATGTCAATTTCTGAATTTGAAGCTCATTCAGGAAACACAGTCTCTAATCCTCTTAAAAATATATATATAGATAAAGGGACTTCACTTTTTCAATGCATGCTCGAGTCATGCAACAAACTAGATATATCCAAACGAGAATATTTTCATGCCATTGAGAATATGAGTGATGACCCAAACGATGAGTTATGTCTGATTTGTGGAGATGGTGGACGTCTAATATGTTGTGAAAGTTGCCCAACAGCTTTCCATGAAAGTTGTTTGAATACTGATATGCTTCCATCCGGTGTCTGGCTGTGTACTTATTGTCGTTGCAAATTTTGTGGATTGCTTGGTAAAAGTACAAACGTAGTGGAAACCACTCGAGTTGAACATCACAAATCTTGTGCTGAGGCAAATATCGTTGATTTCAAAGATGCATTCTTATGTGGAAATAGATCGTGTCAAGAGTTGTCTGAGAGACTTGAAATGCTACTTGGATTTAAACATGAAATGGAAGATGGATTTTCTTGGAGTTTCATTCGTCGGTCAAATATCAACTACCATGATAATCAAATAAAGCCTCAGGTGGTTGAATGCAATTCCAAGTTGGCTATTGCATTATCAATATTCGATGAGTGTTTCGAGCCTTCTATCGATTATAAATGCAAGATAAATATGATGCAAAGTATGATATACGGTTGTGGGTCAAACTTTGCTCGTGTGGATTGTAAGGGATTTTTTACTGCAATACTTGAGAAAGGTGATGAGATGATATCTGTTGCAACTATCAGGATCCATGGGAACCAAGTAGCAGAGATGCCATTTGTTGGGACCCGTGAAATGTATAGGAAACAAGGAATGTGTCGTCGTCTCCTAAATGCCATTGAAATGGGACTCAGCTTTCTAAATTTGGAATTATTGGTCATACCGGCTAACTCTTCAACTGTAGAAACTTGGACTTCTGGTTTAGGATTTGAGCCACTTGAATCAGAAAGCAAAGAAATAATGAAGAACCAGAATCTGTTGCATTTCACTTCCTCAGTATTGTTACAGAAAAGGATACCAAAGTATACTTTTTCTGATCAAGATATGAGTTCTAAACAAGATTACGTTTTTAAGAAGGAGAAGAAGAAGAGAGTGCACGAGGAAGGAAATATGAAAGTCCCAATTAAGGAATCTAGTGCTGAAGAGAGAAAACAGAAAGCATTATGTAAATGGAGGAAGAAGCATAAAGAACTTTACAGAAAAATATAA 2181 0.37 MTDELRSQGMFGKQEDGGREAQIEEGGINREFYHIFDPRGLNILFKSGKWIVAGNENKGDNGGSDKMREKGEGPNGHGLSGRKIIRKQLIDAGWIVGCLFTYQNDYNQEVYVNLDGSRAFTSIIKAYHTLRKHYKDGNGEGKFYEQGFQLIPISEMTINISREKESINEGEFEHIGEKVATTVDGVNRKVNKETLGSGTTGNKQKKGKTRRKWPLVEEGEDDGTTPYKVSNQKQKNTKTKRRRQAPLVYNYEIDSDASSEEDLYEPYKGKRTVFSWMIDLGTFQENSKVYYLKNQRKTSVGKITRDGIHCNCCNEIMSISEFEAHSGNTVSNPLKNIYIDKGTSLFQCMLESCNKLDISKREYFHAIENMSDDPNDELCLICGDGGRLICCESCPTAFHESCLNTDMLPSGVWLCTYCRCKFCGLLGKSTNVVETTRVEHHKSCAEANIVDFKDAFLCGNRSCQELSERLEMLLGFKHEMEDGFSWSFIRRSNINYHDNQIKPQVVECNSKLAIALSIFDECFEPSIDYKCKINMMQSMIYGCGSNFARVDCKGFFTAILEKGDEMISVATIRIHGNQVAEMPFVGTREMYRKQGMCRRLLNAIEMGLSFLNLELLVIPANSSTVETWTSGLGFEPLESESKEIMKNQNLLHFTSSVLLQKRIPKYTFSDQDMSSKQDYVFKKEKKKRVHEEGNMKVPIKESSAEERKQKALCKWRKKHKELYRKI. 727
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g06825 726 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 365 473 IPR013083 -
Seca4g06825 726 ProSiteProfiles Zinc finger PHD-type profile. 376 421 IPR019787 -
Seca4g06825 726 SMART PHD_3 378 419 IPR001965 -
Seca4g06825 726 MobiDBLite consensus disorder prediction 1 20 - -
Seca4g06825 726 PANTHER PHD FINGER PROTEIN 12 79 706 IPR042163 GO:0003714|GO:0045892
Seca4g06825 726 SUPERFAMILY FYVE/PHD zinc finger 372 424 IPR011011 -
Seca4g06825 726 MobiDBLite consensus disorder prediction 189 242 - -
Seca4g06825 726 ProSitePatterns Zinc finger PHD-type signature. 379 418 IPR019786 -
Seca4g06825 726 SUPERFAMILY Acyl-CoA N-acyltransferases (Nat) 514 637 IPR016181 -
Seca4g06825 726 MobiDBLite consensus disorder prediction 61 76 - -
Seca4g06825 726 MobiDBLite consensus disorder prediction 56 78 - -
Seca4g06825 726 Pfam Tify domain binding domain 301 351 IPR032308 -
Seca4g06825 726 ProSiteProfiles Gcn5-related N-acetyltransferase (GNAT) domain profile. 503 664 IPR000182 GO:0016747
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g06825 Seca-Chr4 142850852 142857466 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g06825 82 672 PHD Transcription Factor Family AT4G14920 37.129 7.17e-130 411
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g06825 - - lang:109346644 598.586