Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g06823 ATGGGCAACCTCTTTGGTAGAAACAAAAAGCGTGACACTCAAATTTCTAGAAATGGTAAAGGAAGTGGTGGAAGAATCTCCTCCACCGTAAGCAACAGACCTGTTATATCATCCAATTTTCCTACTCAGGCACCGCCACCATCACAACCACCGTCAATACCAGCACCTCCGCGAGTTCAATCTTTGTCTAAGACTAAGAGATCAATTTTTGGGGCACATAGTTCGGAACAGAGCTCAGGAGTAGTCATGAACACCAAGCAATCTGCCAAGAAATATGCTTTGATTCCTGATAACTTCACTACCCTTGAACAGGTTACAGCGGCCTTAAGGAAAGAGGGTTTAGAATCATCAAATCTCATCCTTGGAATTGATTTCACAAAAAGCAATGAATGGACTGGCAGAATCTCATTCAATAATAGAAGCCTGCATGCTATTGGAAATGAACCTAACCCTTATGAGAAGGCCATCTCCATTATTAGCAAGAGTTTGGCTCCCTTTGATGATGACAACTTGATTCCTTGTTTTGGCTTTGGTGATGCTACCACTCATGATCAAGAAGTGTTCAGCTTTCACAGTGATCATACACCTTGTCATGGTTTTGAGGAAGTTCTGGCTTGCTACCAAAAAATAGTTCCAAACTTGAAACTTTCAGGACCAACTTCTTTTGCTCCGGTGATTGAGGCTGCAATAGACATAGTAGAGAAAAATCGTGGCCAATTCCATGTGTTGGTTATCGTTGCAGATGGTCAGGTTACAAGAAGTGTCGACACTGACGATGGAGAACTCAGTCCTCAAGAAGAGAAGACAATCAAGGCAATTGTTGATGCAAGTGCATATCCACTTGCGATAGTTCTGGTTGGAGTTGGTGATGGACCTTGGGAAGACATGAAAAAGTTTGATGACAAGATACCGGCACGTGATTTTGACAATTTTCAGTTTGTTAATTTTACAGACATTATGTCTAAAAACACAACCCCCTCTGAGAAAGAAACAGCTTTTGCTCTGGCTGCTCTCATGGAGATGCCCTTCCAATATAAAGCAACCATGGAATTTGGAATACTTGGGAAGAGCAAAGAGAATAGTCCCAAGACCTCCTCCTATTCCTTATTCTCGGTCTGCACCACCACCACCACCAGCTCGGGTACCGAGCAATACACCAGCATCCACAGCAGATGA 1176 0.4294 MGNLFGRNKKRDTQISRNGKGSGGRISSTVSNRPVISSNFPTQAPPPSQPPSIPAPPRVQSLSKTKRSIFGAHSSEQSSGVVMNTKQSAKKYALIPDNFTTLEQVTAALRKEGLESSNLILGIDFTKSNEWTGRISFNNRSLHAIGNEPNPYEKAISIISKSLAPFDDDNLIPCFGFGDATTHDQEVFSFHSDHTPCHGFEEVLACYQKIVPNLKLSGPTSFAPVIEAAIDIVEKNRGQFHVLVIVADGQVTRSVDTDDGELSPQEEKTIKAIVDASAYPLAIVLVGVGDGPWEDMKKFDDKIPARDFDNFQFVNFTDIMSKNTTPSEKETAFALAALMEMPFQYKATMEFGILGKSKENSPKTSSYSLFSVCTTTTTSSGTEQYTSIHSR. 392
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g06823 391 SUPERFAMILY vWA-like 117 299 IPR036465 -
Seca4g06823 391 PANTHER COPINE FAMILY PROTEIN 1 72 367 - -
Seca4g06823 391 Pfam Copine 141 354 IPR010734 -
Seca4g06823 391 SMART VWA_4 116 319 IPR002035 -
Seca4g06823 391 MobiDBLite consensus disorder prediction 40 57 - -
Seca4g06823 391 MobiDBLite consensus disorder prediction 1 66 - -
Seca4g06823 391 MobiDBLite consensus disorder prediction 17 39 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g06823 Seca-Chr4 142808479 142818500 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g06823 K16280 - gmx:100790153 559.681
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca4g06823 4 142808479 142818500 Seca4g06823 4 142808479 142818500 ECH
Seca4g06823 4 142808479 142818500 Seca4g06822 4 142800247 142803108 PCT