Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g06822 ATGGCAAAGGCTGCAATAGACATAGTAGAGAAAAATCGTGGCCAATTCCATGTGTTGGTTATTGTTGCAGATGGTCAGGTTACAAGAAGTGTTGACACTGATGATGGAGAACTCAGTCCTCAAGAAGAGAAGACAATCAAAGCAATTGTTGATGCAAATGCATATCCACTTGCGATAGTTCTGGTTGGAGTTGGTGATGGACCTTGGGAAGACATGAAAAAGTTTGATGACAAGATACCAGCACGTGATTATGACAATTTTCAGTTTGTTAATTTTACAGACATTATGTCTAAAAACACAACCCCCTCTGAGAAAGAAACAACTTTTGCTCTGGCTGCTCTCATGGAGATCCCTTTCCAATATAAAGCAACCATGGAATTTGGAATACTTGGACGTGTAACAGGAAGAGCAAAGAGAATAGTCCCAAGACCTCCTCCTATTCCTTATTCTCGGTCTGCACCACCACCACCAGCAGCTCGGGTACCGAGCAATACGCCTGCATCCACAGCATATGAGCTAAACCAAGCGGTCTGCCCTATTTGTCTGACCAATGGAAAGGATTTGGCCTTTGGATGTGGCCACATGACTTGCAGAGATTGTGGATCCAGGTTAACTAATTGTCCCATATGCCGACAGAAGATCACCAGTCGTCTCAGAGTGTACAATGGGTGA 672 0.439 MAKAAIDIVEKNRGQFHVLVIVADGQVTRSVDTDDGELSPQEEKTIKAIVDANAYPLAIVLVGVGDGPWEDMKKFDDKIPARDYDNFQFVNFTDIMSKNTTPSEKETTFALAALMEIPFQYKATMEFGILGRVTGRAKRIVPRPPPIPYSRSAPPPPAARVPSNTPASTAYELNQAVCPICLTNGKDLAFGCGHMTCRDCGSRLTNCPICRQKITSRLRVYNG. 224
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g06822 223 SMART ring_2 178 210 IPR001841 -
Seca4g06822 223 MobiDBLite consensus disorder prediction 142 162 - -
Seca4g06822 223 ProSiteProfiles Zinc finger RING-type profile. 178 211 IPR001841 -
Seca4g06822 223 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 167 222 IPR013083 -
Seca4g06822 223 Pfam Copine 4 130 IPR010734 -
Seca4g06822 223 SUPERFAMILY RING/U-box 172 217 - -
Seca4g06822 223 PANTHER COPINE FAMILY PROTEIN 1 3 198 - -
Seca4g06822 223 Pfam Zinc finger, C3HC4 type (RING finger) 176 216 - -
Seca4g06822 223 MobiDBLite consensus disorder prediction 142 165 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g06822 Seca-Chr4 142800247 142803108 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g06822 K16280 - gmx:100790153 337.421
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca4g06822 4 142800247 142803108 Seca4g06822 4 142800247 142803108 ECH
Seca4g06823 4 142808479 142818500 Seca4g06822 4 142800247 142803108 PCT