Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g06820 ATGGCTCCAATGACTCTCCCACCTGGATTTAGGTTCCACCCCACAGATGAAGAGCTTGTTGCTTACTACTTAGAAAGAAAAATAACAGGTCGCTCAATAGAGCTTGACATCATTGCAGAAGTTGATCTATACAAATGCGAGCCTTGGGATTTGCCAGATAAGTCATTCTTGCCTAGCAAAGACATGGAGTGGTATTTTTACAGTCCAAGAGACAGAAAGTACCCAAATGGATCCAGAACTAACAGAGCAACAAGAGCTGGTTATTGGAAAGCTACAGGGAAAGATAGGCCAGTGCATTCTCAAAAGAGAGCAGTTGGAATGAAGAAAACATTGGTATATTACAGAGGAAGAGCACCTCATGGGATTAGAACCAACTGGGTTATGCATGAATACCGCCTAATTGAATCATTTCCTGGTGCTGCTCTCTCATCTTTGAAGGATTCCTATTCATTGTGTCGAATTTTCAAGAAGACAATTCAAATCCCTGCAGCCAAATCTAAAGAAGAAGAACAAGCAGAGGATATTGCAGCAGCAAATAAGAAGGAACCAATGTGGGTCTCAGAAGAACATGTATTAGGGGAAGACTCAAGTGGCACTGAGATCTCAAGAGAAATGGAAACTGTAGATGAGAAAGTTGTTAATCATGAAAATCCTAAATTTCCATGTGATGCTTCTTCTTCTGATGTCACTCAAGGAACATGTACCCCAACAGATACTTGTGTAGCAGATGATTTTCAACCACAATTTGCTTGTGATGAAGCTAACAGTAGTGCAGCTAATTATAATTCTTATCCAATGGGAATAGCCTACCCTTCAAATCCATTTCAGGATATAGAAATACCTATGTATGCTGGCATGCATTATCAATTCCCACATACACCTTTGGTGATGGAAGATTTCCCACAAGTAAACTTAATGGAGACAAAGTCAATGAAGCCTGAAATAATGACTGAAGACTGCATGTTATATGACAGATACAGGGACTGTTTGAATGGAACACTAGAAGAGATCATCTCTTTGTGTTCCTCTCAAGACCACTCTGTTGCTAATTTTCCAATGCTAGAATGA 1068 0.3989 MAPMTLPPGFRFHPTDEELVAYYLERKITGRSIELDIIAEVDLYKCEPWDLPDKSFLPSKDMEWYFYSPRDRKYPNGSRTNRATRAGYWKATGKDRPVHSQKRAVGMKKTLVYYRGRAPHGIRTNWVMHEYRLIESFPGAALSSLKDSYSLCRIFKKTIQIPAAKSKEEEQAEDIAAANKKEPMWVSEEHVLGEDSSGTEISREMETVDEKVVNHENPKFPCDASSSDVTQGTCTPTDTCVADDFQPQFACDEANSSAANYNSYPMGIAYPSNPFQDIEIPMYAGMHYQFPHTPLVMEDFPQVNLMETKSMKPEIMTEDCMLYDRYRDCLNGTLEEIISLCSSQDHSVANFPMLE. 356
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g06820 355 Gene3D NAC domain 15 160 IPR036093 GO:0003677|GO:0006355
Seca4g06820 355 Pfam No apical meristem (NAM) protein 7 133 IPR003441 GO:0003677|GO:0006355
Seca4g06820 355 SUPERFAMILY NAC domain 3 157 IPR036093 GO:0003677|GO:0006355
Seca4g06820 355 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 5 221 - -
Seca4g06820 355 FunFam Nac domain-containing protein 86 15 160 - -
Seca4g06820 355 ProSiteProfiles NAC domain profile. 6 157 IPR003441 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g06820 Seca-Chr4 142584036 142587534 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g06820 1 352 NAC Transcription Factor Family AT1G54330 50.838 7.51e-99 293
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Seca4g06820 NAM 6.3e-40 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g06820 - - gmx:100808325 622.083