Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g06819 ATGGGCCATCGTTGCTGCGGCAAACAGAAGATCAAAAGAGGATTGTGGTCTCCTGAAGAAGATGAGAAGCTTATTAGATATATCAAAACTCATGGCCATAAAAGTTGGAGTTCTGTACCAAAGTTAGCAGGCTTGCAGAGATGTGGAAAAAGTTGCAGATTGAGATGGATTAACTATCTGAGACCAGATCTGAAGAGAGGTTCATTCACTGCCGAAGAAGAACAGATCATAATTGACATTCATAGAATTCTGGGAAACAGATGGGCCCAAATAGCCAAACATCTCCCTGGAAGAACAGACAATGAGGTCAAGAATTTCTGGAATTCCTGCATTAAAAAGAAGCTTCTCTCTCAAGGGTTAGACCCACAAACCCACAATCTACTCTCTTCTCATAAGAGAACCTCAGCATGTACCATCTCTAACATGAATAATATCCATCAAAACTCCAATTCCATTTTCATTCTGAGTTCAAATGTTGATCCCATTGAATTTGAAACTAGTACTCATCAAACTTTTTCTTCACTACCTAAAGCTCTACCAATTATTACTCAAACAAATTCTACCATTGTTTCCTCTGAATATCAAACCTCATGCAATAATATTCTCTCAAATAAATTCTCTGATTTGCCTCATGAACTATTAGCAGCAGAGAACATAGCCAACATTTGTTCTACTTCCTGCATGAACCCTTCTGTGGTTGAATTGTCTAACAATGAGAATAGCATTTGGTTTTCAAGAGATGGTGCTGAGGAGAATTTTAGAGTTCAAACACTGGAAGAAGAAGAAGCTGGAATACAAGTGCAGGTGCAGCAAGAGAAGGACAAGGGAATTGATGTCAGCAGAGTCAGAGAAGATAATAATCTTGAAATGAATAATGCTTCTTTTGAAGGTTCTAACTTTGATTTTGGGTTGTTGGAAAGTGTACTTGCCTCTGAATTTATGTCTAATGATCTCAACTATATGGATGAACTTGCATGGAACTTTTAG 987 0.3789 MGHRCCGKQKIKRGLWSPEEDEKLIRYIKTHGHKSWSSVPKLAGLQRCGKSCRLRWINYLRPDLKRGSFTAEEEQIIIDIHRILGNRWAQIAKHLPGRTDNEVKNFWNSCIKKKLLSQGLDPQTHNLLSSHKRTSACTISNMNNIHQNSNSIFILSSNVDPIEFETSTHQTFSSLPKALPIITQTNSTIVSSEYQTSCNNILSNKFSDLPHELLAAENIANICSTSCMNPSVVELSNNENSIWFSRDGAEENFRVQTLEEEEAGIQVQVQQEKDKGIDVSRVREDNNLEMNNASFEGSNFDFGLLESVLASEFMSNDLNYMDELAWNF. 329
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g06819 328 Pfam Myb-like DNA-binding domain 13 60 IPR001005 -
Seca4g06819 328 Pfam Myb-like DNA-binding domain 66 109 IPR001005 -
Seca4g06819 328 CDD SANT 68 108 IPR001005 -
Seca4g06819 328 Gene3D - 10 66 - -
Seca4g06819 328 ProSiteProfiles Myb-like domain profile. 61 111 IPR001005 -
Seca4g06819 328 FunFam Transcription factor MYB86 67 143 - -
Seca4g06819 328 SUPERFAMILY Homeodomain-like 10 107 IPR009057 -
Seca4g06819 328 Coils Coil 255 275 - -
Seca4g06819 328 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 61 115 IPR017930 -
Seca4g06819 328 FunFam MYB transcription factor 5 66 - -
Seca4g06819 328 PANTHER MYB DOMAIN PROTEIN 55 1 282 - -
Seca4g06819 328 Gene3D - 68 140 - -
Seca4g06819 328 ProSiteProfiles Myb-like domain profile. 8 60 IPR001005 -
Seca4g06819 328 CDD SANT 16 60 IPR001005 -
Seca4g06819 328 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 8 60 IPR017930 -
Seca4g06819 328 SMART sant 12 62 IPR001005 -
Seca4g06819 328 SMART sant 65 113 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g06819 Seca-Chr4 142506495 142508168 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g06819 1 328 MYB Transcription Factor Family AT3G12720 48.817 6.28e-93 277
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Seca4g06819 Myb_DNA-binding 1.3e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g06819 K09422 - gmx:100791209 450.669