Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g06811 ATGGAGAGAATGTTCCCTCCTAAGAAGCCTTCAACTATGAATTCCCATGACAGACCCATGTGTGTTCAAGGTGACTCGGGTCTCGTTCTCACCACTGACCCAAAACCTCGTCTTCGTTGGACCGTTGAGCTTCATGAACGCTTTGTTGATGCTGTTACTCAGCTTGGAGGCCCTGATAAGGCCACTCCTAAAACCATCATGAGGGTTATGGGTGTGAAGGGTCTCACCCTTTACCACCTCAAGAGCCACCTTCAGAAATTTAGGCTTGGGAAGCAGCCCCACAAGGAATTCAATGATCATTCAATTAAGGATGGTATGAGAGCTTCAGCTTTAGAACTGCAACGAAATACTGCTTCCTCTTCTGCCATGATTGGCCGCAACATGAATGAGTATGCATGCTACTTACCTACCTTCCTTCCTTCATTCACTTATTCCATTAACTCACACATGGTTGATGCAATTAGGATGCAAATAGAGGTGCAGAGAAGACTTCATGAACAACTTGAGGTTCAAAAACACCTTCAGCTAAGGATTGAGGCACAAGGGAAATACATGCAGAGCATATTGGAGAAAGCTTATCAAACACTTGCAGGTGAAAATATGGCTACTAATAACTTGAAGAGTACTATTGGACCTCATCATCAATCCATCCCACCTGACATGGGAATCATGAAGGAATTTGGTTCACCTCTTAGTTTTTCCTCTTTTCAAGATCTTGACATCTATGGATCTGGTGGTGACCAACTTGAGCTTCAACACAACATGGAGAAGCAACCATCCCTTGATGGTTTCATGCAAATCAACAATGATAGTTTGTGTCTTGGGAAGAAGAGGGCTAATCCTTATAGTGGGAATGGTAAGAGTCCTTTGATGTGGAGTGATGATCTCAGGCTTCAAGATTTAGGGACAGCATCATCATGCCTTGGACCTCATCATCAAGATCATGGTGAACATCAGATTCAAATTGCACCATTGGATAGAGGAAGTGATATGGATCCAATGGCTGAGATTTATGACACAAAGCCTGTGCTTCAAGGGGAAGCTGTTGGGGAAAAGAAGTTTGATCCATCTATGAAGCTTGAAAGGCCATCACCAAGAAGGGCACCTCTTCAGGCAGAGAGGATGAGTCCTATGATCAGTACTGGTACCATGGCACAAGGTAGAAGCTCACCATTTGGGTGA 1182 0.4408 MERMFPPKKPSTMNSHDRPMCVQGDSGLVLTTDPKPRLRWTVELHERFVDAVTQLGGPDKATPKTIMRVMGVKGLTLYHLKSHLQKFRLGKQPHKEFNDHSIKDGMRASALELQRNTASSSAMIGRNMNEYACYLPTFLPSFTYSINSHMVDAIRMQIEVQRRLHEQLEVQKHLQLRIEAQGKYMQSILEKAYQTLAGENMATNNLKSTIGPHHQSIPPDMGIMKEFGSPLSFSSFQDLDIYGSGGDQLELQHNMEKQPSLDGFMQINNDSLCLGKKRANPYSGNGKSPLMWSDDLRLQDLGTASSCLGPHHQDHGEHQIQIAPLDRGSDMDPMAEIYDTKPVLQGEAVGEKKFDPSMKLERPSPRRAPLQAERMSPMISTGTMAQGRSSPFG. 394
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g06811 393 MobiDBLite consensus disorder prediction 376 393 - -
Seca4g06811 393 Gene3D - 34 92 - -
Seca4g06811 393 MobiDBLite consensus disorder prediction 350 393 - -
Seca4g06811 393 SUPERFAMILY Homeodomain-like 34 90 IPR009057 -
Seca4g06811 393 MobiDBLite consensus disorder prediction 1 20 - -
Seca4g06811 393 FunFam Myb family transcription factor 34 92 - -
Seca4g06811 393 Pfam Myb-like DNA-binding domain 38 86 IPR001005 -
Seca4g06811 393 NCBIfam myb-like DNA-binding domain, SHAQKYF class 35 90 IPR006447 GO:0003677
Seca4g06811 393 MobiDBLite consensus disorder prediction 350 368 - -
Seca4g06811 393 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 32 92 IPR017930 -
Seca4g06811 393 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL11 12 214 IPR044848 GO:0003700
Seca4g06811 393 Pfam MYB-CC type transfactor, LHEQLE motif 150 195 IPR025756 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g06811 Seca-Chr4 142180908 142183228 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g06811 4 393 G2-like Transcription Factor Family AT1G79430 55.362 1.61e-126 367
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Seca4g06811 Myb_DNA-binding 2.2e-06 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g06811 - - gmx:100807793 585.489
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca4g06811 4 142180908 142183228 Seca4g06811 4 142180908 142183228 ECH
Seca4g06811 4 142180908 142183228 Seca4g06811 4 142180908 142183228 PCT