Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g06783 ATGGCAGAGAGTGGTAGCGGACACGGCAGAACCAAACCGCTTCTGGTTTCGCCGGAGGAAGAGAATGCAAACTCTTCATGGAGACTCAATGTGAAGGAGTTTCATCTACCAACACAAACCATTGATAATCAACATCAACCTTCCTTCAGTTTCCATGGCCTTCTCCGCAAGCCCAGGAAGCAACGCAAAGTGGCAGAATATTACAAGAAACAAGAGAGGCTCCTTGAAGGATTTAATGAGATGGAGACTATGACTGAGACAGGTTTCTTCCCAGGAAATCTCACTGAGGAAATGAAGCAACTGGCTAAGAGTGAGAGGTTGGCAGTGCATGTGTCAAATGCATGTAACTTGGTGCTATTTGCAGCAAAGGTTTTCGCCTCAATTGAGAGCAGATCATTAGCAGTCATTGCCTCTACTCTGGATTCTCTCTTGGATCTCTTGTCAGGGTTCATACTGTGGTTTACTGCCCATGCCATGAGAAAACCAAACAGATATCACTATCCAATTGGAAAAAAACGCATGCAACCAGTGGGCATCATTGTTTTTGCATCAGTGATGGCAACCTTGGGGTTACAGATTTTGATTGAGTCTGGCCGACAACTTATTTCCAAGTTTCTCGTTTCATTCTTTTTCTTACAGGCTAAGCCTGAAATGGATCCAGTAAAGGTGAGATGGATGATCGCGATTATGGTATTTGTGACTATGGTGAAGTTCATTCTTATGATCTACTGTCGAAGATTTAAAAATGAAATCATCAGAGCTTATGCACAAGATCATTTTTTTGATGTCATTACTAACTCCGTCGGATTAGCTGCTGCTGTGCTAGCTGTCAAATTCTACTGGTGGATTGATCCAACAGGAGCTATTGTGATAGCATTGTATACAATTAACACATGGGCCAAGACAGTCATTGAGAATGTTTGGTCACTAATTGGAAGGACAGCACCACCTGATTTTCTGGCGAAGTTAACTTACCTAATATGGAATCACCATGAACAGATTAAACACATAGACACCGTTAGAGCATACACCTTTGGTTCACATTACTTTGTGGAAGTTGACATAGTGTTGCCAGAGGACATGCTTCTCAACCAAGCACACAATATTGGTGAGACACTCCAAGAGAAGCTGGAGCAGCTTCCAGAAGTTGAGAGGGCTTTTGTGCACATAGATTTTGAGTTCACTCACAGACCCGAGCATAAGACCATGGTATGA 1215 0.428 MAESGSGHGRTKPLLVSPEEENANSSWRLNVKEFHLPTQTIDNQHQPSFSFHGLLRKPRKQRKVAEYYKKQERLLEGFNEMETMTETGFFPGNLTEEMKQLAKSERLAVHVSNACNLVLFAAKVFASIESRSLAVIASTLDSLLDLLSGFILWFTAHAMRKPNRYHYPIGKKRMQPVGIIVFASVMATLGLQILIESGRQLISKFLVSFFFLQAKPEMDPVKVRWMIAIMVFVTMVKFILMIYCRRFKNEIIRAYAQDHFFDVITNSVGLAAAVLAVKFYWWIDPTGAIVIALYTINTWAKTVIENVWSLIGRTAPPDFLAKLTYLIWNHHEQIKHIDTVRAYTFGSHYFVEVDIVLPEDMLLNQAHNIGETLQEKLEQLPEVERAFVHIDFEFTHRPEHKTMV. 405
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g06783 404 Pfam Cation efflux family 111 310 IPR002524 GO:0006812|GO:0008324|GO:0016020|GO:0055085
Seca4g06783 404 Gene3D Cation efflux protein, cytoplasmic domain 315 392 IPR036837 -
Seca4g06783 404 MobiDBLite consensus disorder prediction 1 22 - -
Seca4g06783 404 FunFam Metal tolerance protein 11 313 393 - -
Seca4g06783 404 Pfam Dimerisation domain of Zinc Transporter 317 391 IPR027470 -
Seca4g06783 404 SUPERFAMILY Cation efflux protein transmembrane domain-like 104 312 IPR027469 -
Seca4g06783 404 NCBIfam cation diffusion facilitator family transporter 109 391 IPR002524 GO:0006812|GO:0008324|GO:0016020|GO:0055085
Seca4g06783 404 PANTHER MITOCHONDRIAL METAL TRANSPORTER 1-RELATED 17 401 - -
Seca4g06783 404 FunFam Metal tolerance protein 11 108 310 - -
Seca4g06783 404 Gene3D Cation efflux protein transmembrane domain 106 310 IPR027469 -
Seca4g06783 404 SUPERFAMILY Cation efflux protein cytoplasmic domain-like 315 391 IPR036837 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g06783 Seca-Chr4 141250107 141254146 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g06783 - - gmx:100797536 686.797
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca4g06783 4 141250107 141254146 Seca4g06783 4 141250107 141254146 ECH