Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g06781 GGTGCTTTAGAAAATGTATTGGAAAGAAGCTCTAAAATTCAGTTGTGTGATGGTTCCATTGTGAATTTGGACAATAATGCCAGGAACCTCATATTACAACAAGCTCTTCATGAAATGACAACTAGTGCATTACGCTGTTTGGGATTTGCTTACAAGGATGAGCTTAATGCATTTGAAAACTACAATGGTAATGATGATCATCCAGCCCATCAGCTTTTGCTTAATCCTTCCAATTATTCATCAATTGATAGTGAACTTATTTTTGTTGGCTTGGTTGGATTGAGGGATCCTCCTAGGGAGGAGGTATACCAAGCAATTAAAGACTGCATAGCAGCTGGAATTCGTGTTATAGTTATAACTGGAGACAATAAGAACACTACTGAAGCTATATGCCGTGAAATAGGTGTGGAAATGGAAGCTTCAAATATGGTACTGACAGATGATAATTTCAGTACCATTGTAGCTGCTGTTGGTGAAGGTAGATCTATCTACGATAGTATGAAGGCTTTTATCAGGTGA 519 0.3796 GALENVLERSSKIQLCDGSIVNLDNNARNLILQQALHEMTTSALRCLGFAYKDELNAFENYNGNDDHPAHQLLLNPSNYSSIDSELIFVGLVGLRDPPREEVYQAIKDCIAAGIRVIVITGDNKNTTEAICREIGVEMEASNMVLTDDNFSTIVAAVGEGRSIYDSMKAFIR. 173
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g06781 172 PRINTS P-type cation-transporting ATPase superfamily signature 90 101 - -
Seca4g06781 172 PRINTS P-type cation-transporting ATPase superfamily signature 112 122 - -
Seca4g06781 172 SUPERFAMILY HAD-like 82 157 IPR036412 -
Seca4g06781 172 Pfam haloacid dehalogenase-like hydrolase 89 143 - -
Seca4g06781 172 SUPERFAMILY Metal cation-transporting ATPase, ATP-binding domain N 1 102 IPR023299 GO:0000166
Seca4g06781 172 PANTHER CALCIUM-TRANSPORTING ATPASE 139 172 - -
Seca4g06781 172 Gene3D - 98 136 IPR023214 -
Seca4g06781 172 Gene3D - 138 155 IPR023214 -
Seca4g06781 172 Gene3D - 1 97 IPR023299 GO:0000166
Seca4g06781 172 Gene3D - 156 172 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g06781 Seca-Chr4 141075614 141076759 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g06781 90 172 Primary Pumps ATPases(2) AT1G07670 48.387 4.08e-15 70.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g06781 K01537 - gmx:100812151 238.81