Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g06753 ATGGACAAAACAGAGCAGACTCAACAGCAGCAGCAGCAGCAGCATGTGATGGGAGTTGCAGCAGGTGCTAGCCAGATGGCCTATTCTTCTCACTACCAGACTGCTCCCATGGTGGCCTCTGGCACCCCTGCCATAGCGGTTCCTTCCCCAACACAACCTCCAGCTTCCTTCTCTAATTCAGCTCACCAACTTGCATACCAGCAAGCACAGCATTTCCACCATCAACAGCAGCAACAGCAACAACAACAGCTTCAAATGTTCTGGGCAAACCAAATGCAAGAAATTGAGCAAACAATTGACTTTAAAAACCATAGTCTCCCGCTTGCTCGGATAAAAAAAATAATGAAAGCTGATGAAGATGTCCGGATGATTTCAGCAGAAGCTCCAGTGATATTTGCAAAAGCATGCGAAATGTTCATATTAGAGTTGACTTTGCGATCTTGGATCCACACAGAAGAGAACAAGAGGAGAACATTACAAAAAAATGATATAGCAGCTGCTATTTCAAGAAATGATGTTTTCGATTTCTTGGTTGATATTATTCCAAGGGATGAGTTGAAAGAAGAGGGACTTGGAATAACAAAGGCTACTATTCCATTAGTGGGTTCTCCTGCTGATATGCCATATTATTATGTCCCACCACAACATCCTGTAGGACCTACAGGGATGATCATGGGAAAGCCAGTTGATCAAGCAGCACTATATTCTACACAGCAGCCACGACCTCCCATGGCTTTCATGCCATGGCCACATACACAACCTCAGCAACAGCAGCCACCGCAACAGCAACAAACAGATTCTTGA 804 0.4478 MDKTEQTQQQQQQQHVMGVAAGASQMAYSSHYQTAPMVASGTPAIAVPSPTQPPASFSNSAHQLAYQQAQHFHHQQQQQQQQQLQMFWANQMQEIEQTIDFKNHSLPLARIKKIMKADEDVRMISAEAPVIFAKACEMFILELTLRSWIHTEENKRRTLQKNDIAAAISRNDVFDFLVDIIPRDELKEEGLGITKATIPLVGSPADMPYYYVPPQHPVGPTGMIMGKPVDQAALYSTQQPRPPMAFMPWPHTQPQQQQPPQQQQTDS. 268
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g06753 267 PANTHER HISTONE-LIKE TRANSCRIPTION FACTOR CCAAT-RELATED 59 253 - -
Seca4g06753 267 Pfam Core histone H2A/H2B/H3/H4 65 168 IPR007125 GO:0003677
Seca4g06753 267 SUPERFAMILY Histone-fold 61 177 IPR009072 GO:0046982
Seca4g06753 267 MobiDBLite consensus disorder prediction 238 267 - -
Seca4g06753 267 FunFam Nuclear transcription factor Y subunit gamma 71 183 - -
Seca4g06753 267 Gene3D Histone, subunit A 66 183 IPR009072 GO:0046982
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g06753 Seca-Chr4 139308917 139312050 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g06753 84 212 CCAAT-HAP5 Transcription Factor Family AT1G56170 90.000 2.29e-82 244
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YC Seca4g06753 CBFD_NFYB_HMF 2.3e-17 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g06753 K08066 - gmx:100796987 405.216
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca4g06753 4 139308917 139312050 Seca4g06753 4 139308917 139312050 ECH