Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g06751 ATGCAGAAACATCAATACAATTCCATGGAACCTAGAAATGAGGAAATCCATCCCGCATCTCAGTCAGTCCTGCAAGACCATCTGGATGGCATGCATATCAATGCACGGCCTTCTGCCTTTAATATGTCATCAGAAAATAAACCTGTACTTAATTACTCCATACAGACTGGGGAAGAATTTGCTCTTGAGTTTATGAGAGATAGGGTGAATCTCAGGAAACCTTCCTTTCCAAATGTTGTGGGTGATCCCAGTTATTCAACAGGGTATATGGAATTGAAAGGAATTTTAGGCCATCCAGGATCTGACAGTGGGTCAGATATTTCTGTGCTCACAAAGATTGAAAAAGTTCCAAAAGAGTTTGACAGGAGAAACTCTTCTCTACACCAGGACAGAAGTAATTATGGGTCAGCTCGATCAATTCCTAGAACTTCAAGTAATCAAGACAATAACCGAGTCCTGCATAGTATTGCCTCTTCTGGAGCTTCTGACAACTCATCAATAAAGATGAAGTTTTTATGCAGCTTTGGTGGTAGAATATTACCACGGCCCAGTGATGGAAAGCTTAGATATGTTGGGGGTGAAACACGGATTATTAGTATAAGGAAGGACATAAGTTGGCAGGAGCTTATGCAGAAAACATCATCAATTTTCAATGAAGCTCATGTAATAAAGTATCAGCTCCCTGGAGAAGATATTGATGCTCTAGTTTCAGTATCTTCTGATGAGGATGTGCGGAATATGATGGAGGAATGTCATGATCTACAAAGCAGAAGAGGATCACTAAAGCTTAGGATGTTTCTATTCCCTTTAAATGATTTGGATGATACTCAGTTTGGTCTAGGTAGCATTGATGGTGATTCTGAAATCCAGTATGTAGTTGCTATCAATGGCATGGACTCGGGATCAAGAAATAACTCATTCCTTCTTGGTGCAAGCAGTTCTACTAATAACATACATGAATTGGATGGACAAAATATTGAGAGGGAGACCAATAAAGTTCTGGTAGAATCATTTGGTGTCAGCAGTTCTTCCATGACTGGCAATGTTAACTCATCAATGACAATTCAGTCTTCACAACCTATGCTACCAACCTCCACAAATGCTTATGAAGCCTATCCATTGTTTTATAATGATCAGATCATTCATCATGGGGGAACTAGTCAATATCCAATACACCATGGTCTTGATCCTTCTAACAACTCTGCTCGCAATCTTGGAGAGATTCCAGTTTCTGTGCCTGCTCATGGTCTTGTTAACCAAGGAATCATAAATGATGGGCAAGCATCCAGTGAGTTGCAAGTACAAATTTCAGATATGCCTTCAATGCAGGTAAAAAGAAAGGGCGATAATGCCATTCATACAGGCAATGACCCAGTAAAAGTTTTCTCGGAAGCACCATATCCTATTCCTTTGCAGCCATTTGAGGGCAGTTTGCAAGGTAATTTATCAGAGGCACCAGTTACTGCTGCTGTATCAGAAGGACATCATCTAGCACTGCCATCAAAAAACAAGGGTAAACACCAGCCATCTGAAGATGCCTCTTCATTGGTTACTACTTTGAGTATGAATCCAACACAGACTTCTAAATCTGGTGAAGATGACTTCTATACTGCATCCATGGATGCATTCAGTCGTCCTCATGTTGATGCTGAGTCCAATGTAATTGATTTCAGTTGCCTTGAACCACCACCACTTCCTAACAGAGTCTATTATTCGGAGAGAATTCCTAGGGAGCAGGCAGATTTGCTCAACCGATCTACAAAGTCAGATGATGCATATGGTTCTCACTTACTCATGGCAGATTTACTTTCTGATTTCAACCAGATGAATTCAGTTACAGAATCCAGTGACATGTTGCACAATGGGAATATGTCAAATCTGAACACAGTGTCCAGCTCAGTAGCAAAGCCCTTGCATGCAGATAGCCATACCATTGATGATGGATTTGCCCAGCTGCAGAATTACAAACATTTGCCTGATGCAACTAGCCAGGTGAATTCAAAGTTGTCAAAGTTTGTGGATCCTGAGTTGAAGCAGGTATTATCAGATAACAAAGTTTCCAGAAATGAGGAGCAGGTCCATGGTTCTGAAAATGAAACCAATCGCTCCAAAGATATCAATAACATTCCCCTAGTTGATGAAACCAAGGGCACTGAACATCTTGCATTTCACCGGGTTCCTTCTGTTGAACATAATGAGAATCTAATGTCTAAACTCCCAGACCTCAATTTGGGTGAGGTTCCTTCCAGGGAATCCAATAATGATACTAAGGTCCAAGCACTGCCTTTTGTTTTAACTGGAAACACAAGCCAAGATGTTTCTCAAGATTTTCCCCAGGATGCTAAATCCAAAACTGCTCAGGGTGACATTCTGATTGATATTGAGGACAGGTTTCCCCGTGATTTCCTCTACGATATATTCTCCAAAGCAACAGTTTCAGAAGATTCCTCAAACGTTGGACCATTACCAACAGATAGAGCAGGTTTGAGCTTAAACGTGGACAATCATGAACCTAAACGTTGGTCATATTTTCAGAAGTTGGCCCAAGAGGGGTATGATAATGTTTCTCTAATTGATCAGGATAATCTTGGTTTTCCATCTTCTGTAAGAAAAGTACAAGAAGGTGATAGTAAATCCCAACAATCTGCTCCTCTACCGGCAGATGGTGTTCCAACAGGACACAAGGAATCCCACCTAAATTTTGGTCAGGAAACTCAGAGAAACTTACCTGTAACAACTAAAACAGAGGCCACTGTTTTCCCCCCAAAATATGACCATTCCCAACTTACAGGCAATGAAAATAAGAATGTGGATGGCATAATGGAAAACATTAGACCACAGGATTCTGAATATCAGGATGGCAATAATGAAACAAGGAATTTGGGTTTAGCCCCACAAGATACTAGTTTGGGAGGTTTTGACATCAGTACTTTGCAGCTCATAAAGAATGAAGATCTTGAAGAGTTGAAAGAACTAGGTTCCGGTACCTTTGGAACTGTGTATCATGGAAAATGGCGGGGATCAGATGTTGCAATTAAAAGAATAAAGAAAAGCTGTTTTGCTGGTCGATCTTCAGAACAAGAGAGACTGACTGTAGAGTTCTGGCGGGAAGCTGACATACTTTCCAAGCTTCACCATCCAAATGTGGTGGCATTTTATGGTGTAGTTCAGGATGGACCAGGAGCAACATTAGCCACTGTTACAGAGTACATGGTAGATGGTTCTCTTAGGCATGTTTTGCTTCGTAAAGATAGGTATCTTGATCGCCGCAAGAGGCTGATAATTGCCATGGATGCAGCTTTCGGAATGGAATATTTACACTCAAAAAATATTGTGCATTTTGACTTGAAATGTGACAATTTGCTTGTGAATTTGAAGGATCCTTTACGACCAATATGCAAGGTTGGTGATTTTGGCCTGTCAAAAATTAAGCGAAATACCCTAGTGACTGGTGGTGTGCGTGGAACTCTACCTTGGATGGCACCAGAGCTGCTGAATGGTAGCAGCAATAAAGTTTCAGAAAAGGTTGATGTGTTCTCTTTTGGTATTGTATTATGGGAGATTCTTACTGGTGACGAGCCATATGCTAACATGCACTATGGTGCGATCATAGGAGGTATTGTGAATAACACATTAAGACCCACAATCCCAAGTTATTGTGATCTTGAGTGGAAAACACTAATGGAGCAGTGTTGGGCACCTAATCCTGCAGTCAGGCCATCCTTCACAGAAATTGCTCGCCGCTTGCGTGTGATGTCTGCAGCTGCTAGCCAGACCAAAGGACAGGGCCATAAGGCATCTAAATGA 3807 0.4121 MQKHQYNSMEPRNEEIHPASQSVLQDHLDGMHINARPSAFNMSSENKPVLNYSIQTGEEFALEFMRDRVNLRKPSFPNVVGDPSYSTGYMELKGILGHPGSDSGSDISVLTKIEKVPKEFDRRNSSLHQDRSNYGSARSIPRTSSNQDNNRVLHSIASSGASDNSSIKMKFLCSFGGRILPRPSDGKLRYVGGETRIISIRKDISWQELMQKTSSIFNEAHVIKYQLPGEDIDALVSVSSDEDVRNMMEECHDLQSRRGSLKLRMFLFPLNDLDDTQFGLGSIDGDSEIQYVVAINGMDSGSRNNSFLLGASSSTNNIHELDGQNIERETNKVLVESFGVSSSSMTGNVNSSMTIQSSQPMLPTSTNAYEAYPLFYNDQIIHHGGTSQYPIHHGLDPSNNSARNLGEIPVSVPAHGLVNQGIINDGQASSELQVQISDMPSMQVKRKGDNAIHTGNDPVKVFSEAPYPIPLQPFEGSLQGNLSEAPVTAAVSEGHHLALPSKNKGKHQPSEDASSLVTTLSMNPTQTSKSGEDDFYTASMDAFSRPHVDAESNVIDFSCLEPPPLPNRVYYSERIPREQADLLNRSTKSDDAYGSHLLMADLLSDFNQMNSVTESSDMLHNGNMSNLNTVSSSVAKPLHADSHTIDDGFAQLQNYKHLPDATSQVNSKLSKFVDPELKQVLSDNKVSRNEEQVHGSENETNRSKDINNIPLVDETKGTEHLAFHRVPSVEHNENLMSKLPDLNLGEVPSRESNNDTKVQALPFVLTGNTSQDVSQDFPQDAKSKTAQGDILIDIEDRFPRDFLYDIFSKATVSEDSSNVGPLPTDRAGLSLNVDNHEPKRWSYFQKLAQEGYDNVSLIDQDNLGFPSSVRKVQEGDSKSQQSAPLPADGVPTGHKESHLNFGQETQRNLPVTTKTEATVFPPKYDHSQLTGNENKNVDGIMENIRPQDSEYQDGNNETRNLGLAPQDTSLGGFDISTLQLIKNEDLEELKELGSGTFGTVYHGKWRGSDVAIKRIKKSCFAGRSSEQERLTVEFWREADILSKLHHPNVVAFYGVVQDGPGATLATVTEYMVDGSLRHVLLRKDRYLDRRKRLIIAMDAAFGMEYLHSKNIVHFDLKCDNLLVNLKDPLRPICKVGDFGLSKIKRNTLVTGGVRGTLPWMAPELLNGSSNKVSEKVDVFSFGIVLWEILTGDEPYANMHYGAIIGGIVNNTLRPTIPSYCDLEWKTLMEQCWAPNPAVRPSFTEIARRLRVMSAAASQTKGQGHKASK. 1269
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g06751 1268 FunFam Octicosapeptide/phox/Bem1p domain kinase superfamily protein 979 1073 - -
Seca4g06751 1268 ProSiteProfiles Protein kinase domain profile. 986 1251 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca4g06751 1268 MobiDBLite consensus disorder prediction 682 705 - -
Seca4g06751 1268 CDD STKc_MAP3K-like 992 1249 - -
Seca4g06751 1268 CDD PB1_UP2 172 268 - -
Seca4g06751 1268 MobiDBLite consensus disorder prediction 682 701 - -
Seca4g06751 1268 SUPERFAMILY CAD & PB1 domains 184 276 - -
Seca4g06751 1268 ProSitePatterns Protein kinases ATP-binding region signature. 992 1017 IPR017441 GO:0005524
Seca4g06751 1268 Pfam PB1 domain 185 269 IPR000270 GO:0005515
Seca4g06751 1268 FunFam Octicosapeptide/phox/Bem1p domain kinase superfamily protein 1074 1266 - -
Seca4g06751 1268 MobiDBLite consensus disorder prediction 129 150 - -
Seca4g06751 1268 SUPERFAMILY Protein kinase-like (PK-like) 978 1248 IPR011009 -
Seca4g06751 1268 MobiDBLite consensus disorder prediction 898 913 - -
Seca4g06751 1268 MobiDBLite consensus disorder prediction 867 886 - -
Seca4g06751 1268 ProSitePatterns Serine/Threonine protein kinases active-site signature. 1111 1123 IPR008271 GO:0004672|GO:0006468
Seca4g06751 1268 FunFam Octicosapeptide/phox/Bem1p domain kinase superfamily protein 188 270 - -
Seca4g06751 1268 MobiDBLite consensus disorder prediction 867 913 - -
Seca4g06751 1268 PANTHER SERINE-THREONINE PROTEIN KINASE 213 1250 - -
Seca4g06751 1268 SMART serkin_6 986 1252 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca4g06751 1268 Gene3D Transferase(Phosphotransferase) domain 1 1074 1268 - -
Seca4g06751 1268 MobiDBLite consensus disorder prediction 120 150 - -
Seca4g06751 1268 SMART PB1_new 183 270 IPR000270 GO:0005515
Seca4g06751 1268 PRINTS Tyrosine kinase catalytic domain signature 1105 1123 IPR001245 GO:0004672|GO:0006468
Seca4g06751 1268 PRINTS Tyrosine kinase catalytic domain signature 1176 1198 IPR001245 GO:0004672|GO:0006468
Seca4g06751 1268 PRINTS Tyrosine kinase catalytic domain signature 1068 1081 IPR001245 GO:0004672|GO:0006468
Seca4g06751 1268 PRINTS Tyrosine kinase catalytic domain signature 1220 1242 IPR001245 GO:0004672|GO:0006468
Seca4g06751 1268 Gene3D - 187 267 - -
Seca4g06751 1268 Gene3D Phosphorylase Kinase; domain 1 979 1073 - -
Seca4g06751 1268 Pfam Protein tyrosine and serine/threonine kinase 987 1249 IPR001245 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g06751 Seca-Chr4 139133623 139139766 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g06751 7 1178 MAP Kinase Kinase Kinase AT1G79570 43.347 0.0 839
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TKL-Pl-6 Seca4g06751 PK_Tyr_Ser-Thr 9.3e-62 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g06751 - - gmx:100799118 2027.68