Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g06750 ATGATGGAACAATCAAGATTCCAAAATCCTTCTATCCAATGCAATAGAATGGAAACTAGAAACGAATACCAGCCTGGATCACAGTCAGTAATGCAGCAGGACCCTCTGGATGGCGTTCATACTAGTAGGCGACCACCTGACCTCATTACATCAGAAGTTAAACCTAAACTTAATTACTCCATACAGACGGGTGAGGAGTTTGCTCTTGAATTTATGAGAGATAGGGTGAATCTCAGGAAGCCGGTATTTTCAAATGTCAGTGATTCCAATTATACAACAGGTTATATGGAACTGAAAGGCATTTTAGGCATCAGTAATGCAGGATCTGAAAGTGGATCAGACATTTCAATGCTATCAATGATGGAGAAATATCCAAAAGAGTTAGATAGACATGGAGACAGGAGCAATTATGGGTCAATTCTATCACTACCAAGAACTTCAATGAATCAGGACAGTAGACAATTTTTGCATGGGTATGGCTCTGCTGGAAGTTATGATAGCTCATCAATTATGAAGTTTCTTTGCAGCTTTGGTGGTAGAATATTGCCACGTCCATGTGATGGGAAGCTAAGGTATGTTGGAGGCCAAACACGGATTCTTCGTATAAGAAAGGACATATCTTGGCAGGAGCTCATGCAGAAAGCATTGCTAATCTATAATCAAGTTCATGCAATCAAGTATCAGCTTCCTGGGGAAGATCTTGATGCTTTGGTATCTGTTTCATCTGACGAGGATTTGCAGAATATGATGGAGGAATATAATCATCTACAAGACAGAGAAGGATCACAAAAGCTTAGGATGTTTTTGTTCTCAATTAGTGATCTGGAGGATGCTCAGTTTGGTCTCAGCAGCATGGGTGATGATTCTGAGATCCAATATGTTGTTGCTGTTAATGGCATGGACTTGGGATCAAGAACAAACTCAACTCTGATTGGTGTCAGCTTTTCAGCAGCAAATGATATAAATGAATTGGACAGGCAAAATATTGACAGGGAGGCCAATGGAGTTGCTGTAGAATCTACAAGTGTCAGCAATGCTCCCCAGACTAACAATTTTGACCCATCATTGGCTTCTCAGTTTTCACAACCAGTGCTACCAACTTCCTCAAATTCTTATGAAACTTATCCACATCTTTATGGTGATCAAATGATGCGCCATGGGGAACCTAGTGGTCAATATCTTATTAATCATGGTGGTAATCCTTCTCACAAACATGTTATTGGAGAGACTCTTATTACCATGCCTCCCCATACACTGATTAATCAACCAGGGGTTTTGAACGAAGACCATCTACCCAGCAGATTACAAGTACAAAATTCAGAAATACCAGCAACATTGGTGAGAAAGATAGGTGATAGTTCAGTTCAACAAGGAAATGGCCCAGGGAAAATTTTATCCTCGGAAACACTATCCGCAGCTCCTGCTCAATTGTTTGACGGTTACTTGAAAAATAATTTTCCTGAAACATCAATTGTAGTTACTATGCCAGAAGACCATTCGTTGCATCCAACAAAAATGGACCAGCTCCAGGATTATGAAGAGGCTTCTTCTACATCTAGCAGTACATTTGGTCCTGCTTATGTTGATTCCCACTCAAACGCAGTTGACTTGAGTTGTCTTCACCCTCCTCCTATTCCTAAAAGAGTTTACTATTCAGAAAGAATTCCTAGGGAGCAATTAGAGTTGCTGAATCGGTCCACAAAGTCAGATGATGCACACGGTTCTCAGTTTCATGTTTCAGATTTACTTTCTGATGCCAACCCACCAGATTCAGTTACAGAATCTGGTGAAAATTTGCATGATGCAAATCTGTCTAATCTAACTGAGGAATTGAGCATCACAGCAAAGCCCTTTCATGCAGATGGCTATGTCATTGATAATGGGGCTGCCAAACATCGCATATACAACCAGTTGCATGATGCAAGCACTCAGATCAAGTCAAAAATAACTGAGCATGTGAATCCTGAGTTGAAGCAGGTATTACCAGACAGTGAAGGAAGCAAAGATGTGTCAAATAAGGATAATGTTGTTACATTGGAAACGGAAATTTATTGTAAAGATAACCATAACAGACCTGTACTTGATGAGACAAAAGATAGTAAATCAGACTTTCCTACTTTGCATCAGGTTTCTTCTGCTAATCACCTTGATGATCCAGCATCCAATCTTCCAGATGTTGACTGGGGTGATGCCTCTGTGATAGAATCTAATGGCAATTATAACGTACAAGCACTACCTGTTCCTTTAAATGGGAATACAACTACAAAAGATGATTCTCAAGATTTTCCATCAAATGTTTCCAAACAAGTCCAGGGTGACATTCTTATTGATATTAATGATCGTTTCCCCCGTGAACTGCTTACTGATATGTTCTCTAAAGCAATAATAGAAGAAGATCCCTCTAATCTAAATCCATTAGCCTCGGATGGAGTGGGCCTAAGCATAAACATGGAAAATCATGAACCGACACGATGGTCATATTTTCAAAAATTGGCTCAAGAAGGGATCGATAACGTGTCTCTTATTGACCAGGATCATCTTGGTTTTTCTCCTGCGATAGGGAAAGTGGTTGGAGACAATGGAGCTCAACATGTTACGCCTGTAACAACTGATGAAGTTTCACTCAACCATGCAGAGTCCCACCTCAATTTTGGTGAAGAAAATCAGAAAGACTTACATGGAAGGATTGAAACAGATGCCACTGTTCTGAAGTCAAATTATGGTCATCCCCAAATGAATGACACTGAGAGTATGCAATTTGATGCTATGATGGAAAATCTAAGAGCACAAGAGTCAGAATATGCGGTGGGGAAGTTTGAAACAAGAAATAACAATCTACCCCCTGTTGATTCTTTAGGAGATTTTGATATGAGTACCTTGCAGGTCATAATGAATGATGATCTTGAAGAGCTAAAGGAACTGGGTTCTGGTACCTTTGGGACTGTGTATCACGGAAAATGGCGAGGAACAGATGTTGCCATTAAAAGAATAAAGAAAATCTGCTTCACTGGTCGATCATCTGAGCAAGAGAGACTGACTGTTGAATTCTGGCGAGAAGCTGACATTCTTTCCAAGCTTCACCATCCAAATGTGGTGGCGTTTTATGGTGTGGTGCAAGATGGACCAGGAGGAACAATGGCCACTGTTACAGAGTATATGGTTGATGGTTCTCTTAGGCATGTATTACTTCGCAAGGATAGGTATCTTGATCGTCGCAAGAGACTGATAATTGCAATGGATGCAGCTTTTGGAATGGAATATTTGCACTCAAAAAATATTGTTCATTTCGACTTGAAATGTGACAATTTGCTTGTGAACTTGAAAGATCCTATGCGGCCAATATGCAAGGTTGGTGATTTTGGTTTGTCAAAAATTAAAAGAAATACCTTGGTTTCTGGTGGTGTGCGGGGAACTCTACCTTGGATGGCACCAGAGCTTCTGAATGGCAGCAGCAACAGGGTCTCAGAAAAGGTTGATGTGTTCTCCTTTGGGATAGTATTATGGGAGATTCTTACTGGTGAGGAGCCATATGCCAATATGCACTATGGTGCAATCATAGGTGGGATTGTCAATAACACATTAAGGCCAACAATTCCAAATTATTGTGACCCTGAATGGAGGACACTGATGGAGCAATGTTGGGCACCTAATCCTGCAGTTAGGCCATCCTTCACAGAAATAGCCAGTCGATTGCGTGTAATGTCTGCAGCAGCTAGCCAAAACAAAACACAGGGTCATAAGGCATCCAAATGA 3753 0.4066 MMEQSRFQNPSIQCNRMETRNEYQPGSQSVMQQDPLDGVHTSRRPPDLITSEVKPKLNYSIQTGEEFALEFMRDRVNLRKPVFSNVSDSNYTTGYMELKGILGISNAGSESGSDISMLSMMEKYPKELDRHGDRSNYGSILSLPRTSMNQDSRQFLHGYGSAGSYDSSSIMKFLCSFGGRILPRPCDGKLRYVGGQTRILRIRKDISWQELMQKALLIYNQVHAIKYQLPGEDLDALVSVSSDEDLQNMMEEYNHLQDREGSQKLRMFLFSISDLEDAQFGLSSMGDDSEIQYVVAVNGMDLGSRTNSTLIGVSFSAANDINELDRQNIDREANGVAVESTSVSNAPQTNNFDPSLASQFSQPVLPTSSNSYETYPHLYGDQMMRHGEPSGQYLINHGGNPSHKHVIGETLITMPPHTLINQPGVLNEDHLPSRLQVQNSEIPATLVRKIGDSSVQQGNGPGKILSSETLSAAPAQLFDGYLKNNFPETSIVVTMPEDHSLHPTKMDQLQDYEEASSTSSSTFGPAYVDSHSNAVDLSCLHPPPIPKRVYYSERIPREQLELLNRSTKSDDAHGSQFHVSDLLSDANPPDSVTESGENLHDANLSNLTEELSITAKPFHADGYVIDNGAAKHRIYNQLHDASTQIKSKITEHVNPELKQVLPDSEGSKDVSNKDNVVTLETEIYCKDNHNRPVLDETKDSKSDFPTLHQVSSANHLDDPASNLPDVDWGDASVIESNGNYNVQALPVPLNGNTTTKDDSQDFPSNVSKQVQGDILIDINDRFPRELLTDMFSKAIIEEDPSNLNPLASDGVGLSINMENHEPTRWSYFQKLAQEGIDNVSLIDQDHLGFSPAIGKVVGDNGAQHVTPVTTDEVSLNHAESHLNFGEENQKDLHGRIETDATVLKSNYGHPQMNDTESMQFDAMMENLRAQESEYAVGKFETRNNNLPPVDSLGDFDMSTLQVIMNDDLEELKELGSGTFGTVYHGKWRGTDVAIKRIKKICFTGRSSEQERLTVEFWREADILSKLHHPNVVAFYGVVQDGPGGTMATVTEYMVDGSLRHVLLRKDRYLDRRKRLIIAMDAAFGMEYLHSKNIVHFDLKCDNLLVNLKDPMRPICKVGDFGLSKIKRNTLVSGGVRGTLPWMAPELLNGSSNRVSEKVDVFSFGIVLWEILTGEEPYANMHYGAIIGGIVNNTLRPTIPNYCDPEWRTLMEQCWAPNPAVRPSFTEIASRLRVMSAAASQNKTQGHKASK. 1251
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g06750 1250 ProSiteProfiles Protein kinase domain profile. 968 1233 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca4g06750 1250 ProSitePatterns Protein kinases ATP-binding region signature. 974 999 IPR017441 GO:0005524
Seca4g06750 1250 SMART serkin_6 968 1234 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca4g06750 1250 SUPERFAMILY Protein kinase-like (PK-like) 957 1230 IPR011009 -
Seca4g06750 1250 PANTHER SERINE-THREONINE PROTEIN KINASE 224 1232 - -
Seca4g06750 1250 Pfam PB1 domain 187 270 IPR000270 GO:0005515
Seca4g06750 1250 Gene3D Transferase(Phosphotransferase) domain 1 1056 1250 - -
Seca4g06750 1250 Pfam Protein tyrosine and serine/threonine kinase 969 1231 IPR001245 GO:0004672|GO:0006468
Seca4g06750 1250 FunFam Octicosapeptide/phox/Bem1p domain kinase superfamily protein 190 272 - -
Seca4g06750 1250 FunFam Octicosapeptide/phox/Bem1p domain kinase superfamily protein 1056 1248 - -
Seca4g06750 1250 Gene3D - 189 272 - -
Seca4g06750 1250 CDD STKc_MAP3K-like 974 1231 - -
Seca4g06750 1250 MobiDBLite consensus disorder prediction 21 36 - -
Seca4g06750 1250 FunFam Octicosapeptide/phox/Bem1p domain kinase superfamily protein 961 1055 - -
Seca4g06750 1250 SMART PB1_new 185 272 IPR000270 GO:0005515
Seca4g06750 1250 SUPERFAMILY CAD & PB1 domains 187 274 - -
Seca4g06750 1250 Gene3D Phosphorylase Kinase; domain 1 961 1055 - -
Seca4g06750 1250 CDD PB1_UP2 174 270 - -
Seca4g06750 1250 ProSitePatterns Serine/Threonine protein kinases active-site signature. 1093 1105 IPR008271 GO:0004672|GO:0006468
Seca4g06750 1250 MobiDBLite consensus disorder prediction 21 49 - -
Seca4g06750 1250 PRINTS Tyrosine kinase catalytic domain signature 1202 1224 IPR001245 GO:0004672|GO:0006468
Seca4g06750 1250 PRINTS Tyrosine kinase catalytic domain signature 1087 1105 IPR001245 GO:0004672|GO:0006468
Seca4g06750 1250 PRINTS Tyrosine kinase catalytic domain signature 1050 1063 IPR001245 GO:0004672|GO:0006468
Seca4g06750 1250 PRINTS Tyrosine kinase catalytic domain signature 1158 1180 IPR001245 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g06750 Seca-Chr4 139120909 139128817 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g06750 51 612 MAP Kinase Kinase Kinase AT1G16270 39.506 3.23e-98 338
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TKL-Pl-6 Seca4g06750 PK_Tyr_Ser-Thr 1.9e-62 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g06750 - - gmx:100799639 1977.6