Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g06748 ATGCTTTACATTGGGGTGTTGTTCAGTATGCTTGCATGGCATGTAGAAAATCACTATTTGTATAGCTATGCAACCTCTCAATTTGCAAAGACTGTCTTACACCATGTGTATTGCAATAAGATTTTGGCAAAACATGGACAGGATAGAGCTTTCAAATTTCTTGCATATAAAACAACCATGTTCCCTCCAAGTGTTTTGTTACAACATGACGTGACAGTTTACAAGGTTGTGCAAAATCCAAGAGAGTTTGTCATCACCTTTCCCAGAGCATATCATGTTGGATTTAGTCTAGGTAATCTATCTCTCTTTAAATGTGTTTGTGTCAATTTGTTTCTTCATTTTTTGGACATAATTTAA 357 0.3529 MLYIGVLFSMLAWHVENHYLYSYATSQFAKTVLHHVYCNKILAKHGQDRAFKFLAYKTTMFPPSVLLQHDVTVYKVVQNPREFVITFPRAYHVGFSLGNLSLFKCVCVNLFLHFLDII. 119
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g06748 118 Gene3D Cupin 1 110 - -
Seca4g06748 118 ProSiteProfiles JmjC domain profile. 1 118 IPR003347 -
Seca4g06748 118 PANTHER LYSINE-SPECIFIC DEMETHYLASE 1 98 - -
Seca4g06748 118 Pfam JmjC domain, hydroxylase 1 98 IPR003347 -
Seca4g06748 118 SUPERFAMILY Clavaminate synthase-like 1 99 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g06748 Seca-Chr4 139061884 139062377 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g06748 1 105 C2H2 Transcription Factor Family AT5G04240 40.336 2.04e-19 80.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Jumonji Seca4g06748 JmjC 8.1e-20 CL0029
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g06748 - - gmx:100793144 160.614