Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g06747 ATGACAGAATATGCTTACACTTGCAAGGTGACAGAGAAGAGCGATGTTTACAGCTTTGGGGTAGTCCTGATGGAGTTAGTAACAGGGAAGAGGCCTATGGAGCCAGAGTTTGGAGAGAATAAGGACATTGTGCATTGGGTTTGCAGCAATATTAGGAGCAAAGAAGATGCGCTTCAATTAGTGGATTCTACCATTGCAAAGCATTTCAAAGAAGATGCCTTAAAGGTGTTGAGAATTGCAACATTGTGCACAGCAAAAATTCCAGCTGCAAGACCATCAATGAGAATGTTGGTTCAAATGTTGGAAGAGGCAGAGCCTTGTGCTTCACCCAAAGTGATCGTGAACATAGATAATTAA 357 0.4202 MTEYAYTCKVTEKSDVYSFGVVLMELVTGKRPMEPEFGENKDIVHWVCSNIRSKEDALQLVDSTIAKHFKEDALKVLRIATLCTAKIPAARPSMRMLVQMLEEAEPCASPKVIVNIDN. 119
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g06747 118 Gene3D Transferase(Phosphotransferase) domain 1 2 115 - -
Seca4g06747 118 ProSiteProfiles Protein kinase domain profile. 1 112 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca4g06747 118 SUPERFAMILY Protein kinase-like (PK-like) 3 105 IPR011009 -
Seca4g06747 118 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN DDB_G0281931-RELATED 2 105 - -
Seca4g06747 118 Pfam Protein tyrosine and serine/threonine kinase 3 101 IPR001245 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g06747 Seca-Chr4 139056787 139057143 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g06747 3 115 Receptor kinase-like Gene Family AT1G09970 59.292 1.25e-46 158
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Seca4g06747 PK_Tyr_Ser-Thr 1.4e-09 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g06747 - - lja:Lj1g3v4156030.1 207.223