Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g06732 ATGGAACCTATTCGCTTACTCATTACTCTTCCATTAATTCCCTTTTTGTTATCCTCTTTTGTTTCTGGTTATTCTTATAATGATGTTAAACTTTGGTGCAGCCAAACTCCCAACTCTCAACCATGTGAGTATTTTTTGAGCAATAACCCCACACATCAATACAAACCCATCAAGGAAAAAGCTGATTTTTTCAAACTTTCATTGCAATTAGCTCAAGAGCGAGCACTCATAGGCCATACAAACACTCTTTCACTTGGTTCAAAATGCCGTAACCCAAGTGAAAAAGCTGCTTGGTCTGATTGCATTGAGCTTTATGAGCAAACCATTCACAAGCTCAATAAAACCTTAGACCCTAACACTAAATGCTCTCAAGTTGATACACAAACATGGCTTAGCACAGCTCTCACTAACCTTGAGACATGCAAAGCTGGGTTTTATGAGCTTGGTGTTCAAGACTATGTGCTTCCTCTGATGTCCAACAATGTTACTAAGTTGCTAAGCAACACATTGGCCCTTAACAAGGTTCAATATCAAGAACCAAGTTACAGAGATGGGTTCCCAACATGGGTCAAGCCAGGTGACAGGAAGTTGTTGCAGGCATCTTCTCCATCTTCTCAGGCTAATGTAGTTGTGGCAAAAGATGGCTCTGGAAAGTACACAACTCTCACTGCAGCCATAAATGCTGCTCCACAAAGTAGCAGTGGAAGGTATGTGATATATGTAAAGGCAGGGACATACAATGAGCAAGTTGACATCAAGGCAAAGAATATCATGTTGGTGGGAGATGGCAATGGAAAGACCATAATCACAGGTAGCAAAAGTGTTGGAGGAGGCACCACAACCTTCCGTTCTGCCACTGTTGCTGTTGTTGGTGATGGATTTATAGCTCAAGATATCACATTCAGGAACACTGCTGGTGCTACAAACCACCAAGCTGTTGCATTGCGTTCTGGATCTGATTTATCAGTGTTTTATAGATGCAGCTTTGAAGGTTACCAAGACACACTGTATGTGCACTCTGAGAGACAATTCTATAGGGAGTGTGACATCTATGGCACAGTTGACTTCATCTTTGGTAATGCTGCTGTGGTGTTCCAAAATTGTAACCTCTTGGTAAGAAACCCTCCAAACAAAGTTAACACAATCACTGCTCAAGGCAGAACAGATGCAAACCAGAACACTGGCATTTCCATTCACAATTGTAGGGTGACAGCTGCCTCAGATTTGAAACCAGTTCAAGGCTCAGTAAAAACTTACCTTGGAAGGCCTTGGCAACAATATTCTCGAACAGTATTCATGAAGACTTATCTTGATAGTTTGATCAATCCAGCAGGTTGGTTGGAATGGAGTGGTGACTTTGCCTTAAGCACTCTGTACTACGGAGAGTACATAAACACAGGACCAGGCTCTTCTACAGCAAACAGAGTCAAATGGTCAGGATATCATGTCATTACCAGTGCTTCTGAAGCCTCAAAATTCACAGTTGCTAATTTTATTGCTGGAAACTCGTGGCTACCATCCACCCGTGTGCCCTTCACCTCTACTTTATAA 1551 0.4204 MEPIRLLITLPLIPFLLSSFVSGYSYNDVKLWCSQTPNSQPCEYFLSNNPTHQYKPIKEKADFFKLSLQLAQERALIGHTNTLSLGSKCRNPSEKAAWSDCIELYEQTIHKLNKTLDPNTKCSQVDTQTWLSTALTNLETCKAGFYELGVQDYVLPLMSNNVTKLLSNTLALNKVQYQEPSYRDGFPTWVKPGDRKLLQASSPSSQANVVVAKDGSGKYTTLTAAINAAPQSSSGRYVIYVKAGTYNEQVDIKAKNIMLVGDGNGKTIITGSKSVGGGTTTFRSATVAVVGDGFIAQDITFRNTAGATNHQAVALRSGSDLSVFYRCSFEGYQDTLYVHSERQFYRECDIYGTVDFIFGNAAVVFQNCNLLVRNPPNKVNTITAQGRTDANQNTGISIHNCRVTAASDLKPVQGSVKTYLGRPWQQYSRTVFMKTYLDSLINPAGWLEWSGDFALSTLYYGEYINTGPGSSTANRVKWSGYHVITSASEASKFTVANFIAGNSWLPSTRVPFTSTL. 517
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g06732 516 NCBIfam pectinesterase inhibitor domain 14 174 IPR006501 GO:0004857
Seca4g06732 516 FunFam Pectinesterase 24 175 - -
Seca4g06732 516 SMART complete 241 418 IPR006633 -
Seca4g06732 516 PANTHER PECTINESTERASE 21 506 - -
Seca4g06732 516 SMART PMEI_2 24 172 IPR006501 GO:0004857
Seca4g06732 516 Gene3D - 202 516 IPR012334 -
Seca4g06732 516 SUPERFAMILY Pectin lyase-like 203 515 IPR011050 -
Seca4g06732 516 CDD PMEI-like_3 31 174 - -
Seca4g06732 516 Pfam Plant invertase/pectin methylesterase inhibitor 29 172 IPR006501 GO:0004857
Seca4g06732 516 FunFam Pectinesterase 202 516 - -
Seca4g06732 516 ProSitePatterns Pectinesterase signature 1. 233 252 IPR018040 -
Seca4g06732 516 Pfam Pectinesterase 208 502 IPR000070 GO:0030599|GO:0042545
Seca4g06732 516 Gene3D Invertase/pectin methylesterase inhibitor family protein 24 175 IPR035513 -
Seca4g06732 516 ProSitePatterns Pectinesterase signature 2. 350 359 IPR033131 -
Seca4g06732 516 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 28 175 IPR035513 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g06732 Seca-Chr4 138593386 138595502 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g06732 7 516 Carbohydrate Esterase AT2G45220 68.102 0.0 729
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g06732 K01051 - gmx:100783964 911.368