Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g06729 ATGGCACTCAGCACTTACTACAATTGGGACACTCTTCAAACTCTCAACTCAGAAATCAGCACCTTCCATGAAGAAGAAGCAACACTTGCACTAGCACCACCCTACCACCACCACTTTCCCTATTTAGATGAAAGCTTCTTCCTTTCAAACACCCTCTTTGATCCCTATTATGAGTATGACCCATATTCAGTTTTTCTCTACCCAGAGATCCACCCTTCTCAACTACTACTTCCTTGCACTTCTTCTTCCCATGATGAATCCCTCATCACAATCAATGAAATTTTCTCAACTGAAGAGTACTTTCCATGTCCAAAGCGCCAAAAATGTTGCTATGAGGAGCCAGAACTAGTGCATTCTTCATTACAGGATGTTATGTCATCCAATTTCTTAGATGGGTTTGTGCCTAATAACCCTTGTAATTCCCTGCTGAAAGCAGAGGAACTCTGCTCAGAGTTTAAAGTACCACAACTTCCACAGGGTAGTAGTGGTGATCTTCAGTGTGAAAAGAAAGCCAATGAGAGGATCATCTCAGCACAGAGCATAGCGGCAAGAGAAAGAAGAAGAAAGATCACTGAGAAGACACAAGAGCTTGGAAAGTTGGTTCCTGGTGGACCTAAGATGAACACAGCTGAGATGCTGCATGCAGCTGCCAAGTATGTTAAGTACCTTCAAGCACAAGTTGAAATGCTTCAACTTATGAAAACACTCAAGGAAGATAATGCAGCTCCTCCAAGTGAAGATCTACACACACTACTTGTTTCTCCTTTGGTGCAAGAGAAGCTATACTCAGAGGAAAGGTGCTTTGTTCCAAAAGAGTTTGTCACTACCTTGACAAATCATGATGATGTTCAATCAAAGCCTATAATCCTTAAAGATCTTAAACAGCTGATTGGGGCAGACACTAATCAGAACAAAACAAAGCAAGAATAA 930 0.4151 MALSTYYNWDTLQTLNSEISTFHEEEATLALAPPYHHHFPYLDESFFLSNTLFDPYYEYDPYSVFLYPEIHPSQLLLPCTSSSHDESLITINEIFSTEEYFPCPKRQKCCYEEPELVHSSLQDVMSSNFLDGFVPNNPCNSLLKAEELCSEFKVPQLPQGSSGDLQCEKKANERIISAQSIAARERRRKITEKTQELGKLVPGGPKMNTAEMLHAAAKYVKYLQAQVEMLQLMKTLKEDNAAPPSEDLHTLLVSPLVQEKLYSEERCFVPKEFVTTLTNHDDVQSKPIILKDLKQLIGADTNQNKTKQE. 310
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g06729 309 CDD bHLH_AtbHLH_like 179 231 IPR045239 -
Seca4g06729 309 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 174 223 IPR011598 GO:0046983
Seca4g06729 309 SMART finulus 180 229 IPR011598 GO:0046983
Seca4g06729 309 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 173 233 IPR036638 GO:0046983
Seca4g06729 309 Gene3D - 173 242 IPR036638 GO:0046983
Seca4g06729 309 PANTHER TRANSCRIPTION FACTOR HEC3-RELATED 172 273 IPR045843 GO:0003700|GO:0006355
Seca4g06729 309 Pfam Helix-loop-helix DNA-binding domain 180 224 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g06729 Seca-Chr4 138325112 138327453 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g06729 126 300 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G30670 43.750 4.18e-34 124
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Seca4g06729 HLH 8.9e-07 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g06729 - - gmx:102665938 317.775