Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Seca4g06725 | ATGGAGAAGAACAACAGTAGAGTCTGCAGGATTTGCGATAAGCGCTTCTCGAGTGGAAAAGCGATCGGAGGCCACATGAGATCACACTTTGCCAAATTGCCAATTCCTCCAAAGCCTGAAACCAAGAATCAATCACCGGACAACTCAGCCGAGTTAACCCAGTACCCAATTCAATCTGCTTCCTCACTGACTTACCATTCCAAAAAGAAACCAACACAGAATTTCCGATCTTTGAAGCGCAACTTCTTTGCCTTCTTGGCAAACTCAAACAGAGGAAATGAATCTGGGTCTGACCCTAAAAACCCAACCCACAAAAGATCCAAATGCCACAGCAAACTTTCTGCAGAAGCTGATACAAAAGCTGAACCAAAACAAATGAATTCAATACCTGAAACTTTTCATGCAGAAGAAGCTGCTTGGTCTCTGTTAATGCTTTCCAAGGATAAATGGCCAGAAAGCAAAGAGATCAAGAGACACAAAATGAAGGAAGCCATCGAAAGGGAGGCAAAAGATGGTGAAAATGGTAGCGATGACTTGCTTCACATTCACACTCAAGCCAGGTTCAAGTGTGAGCGGTGCGGGAAAGTGTTCCAATCTTATCAAGCCCTTGGTGGGCACAAAGCAAACCATAAGAAAAAGAATCTATGCCAAGAAGGTGGTGACTTTGAAGATGATCAAAGTGGCAACAATAGCAATGTTACAGATCAAAAAGCTTTTGAGTGCCCATATTGCTACAGAGTGTTCAAGTCTGCTCAAGCACTTGGTGGACACAAGAAGGTACATTTCTCCAATACTAAGATTGCTACTGCTCATACCGGTACTAATGAATTTGGAGATATGTCGGCAGTAGATCTTAATTTTTCAGCTTCTAGAGAACATGAGGAGGATGCCACATGGAATTAA | 903 | 0.4264 | MEKNNSRVCRICDKRFSSGKAIGGHMRSHFAKLPIPPKPETKNQSPDNSAELTQYPIQSASSLTYHSKKKPTQNFRSLKRNFFAFLANSNRGNESGSDPKNPTHKRSKCHSKLSAEADTKAEPKQMNSIPETFHAEEAAWSLLMLSKDKWPESKEIKRHKMKEAIEREAKDGENGSDDLLHIHTQARFKCERCGKVFQSYQALGGHKANHKKKNLCQEGGDFEDDQSGNNSNVTDQKAFECPYCYRVFKSAQALGGHKKVHFSNTKIATAHTGTNEFGDMSAVDLNFSASREHEEDATWN. | 301 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Seca4g06725 | 300 | ProSiteProfiles | Zinc finger C2H2 type domain profile. | 188 | 215 | IPR013087 | - | |
Seca4g06725 | 300 | SMART | c2h2final6 | 7 | 29 | IPR013087 | - | |
Seca4g06725 | 300 | SMART | c2h2final6 | 239 | 261 | IPR013087 | - | |
Seca4g06725 | 300 | SMART | c2h2final6 | 188 | 210 | IPR013087 | - | |
Seca4g06725 | 300 | SUPERFAMILY | beta-beta-alpha zinc fingers | 188 | 261 | IPR036236 | - | |
Seca4g06725 | 300 | PANTHER | ZINC FINGER PROTEIN ZAT1-RELATED | 1 | 292 | IPR044303 | GO:0006355 | |
Seca4g06725 | 300 | MobiDBLite | consensus disorder prediction | 98 | 119 | - | - | |
Seca4g06725 | 300 | Pfam | C2H2-type zinc finger | 8 | 29 | - | - | |
Seca4g06725 | 300 | Pfam | C2H2-type zinc finger | 187 | 213 | - | - | |
Seca4g06725 | 300 | Pfam | C2H2-type zinc finger | 238 | 261 | - | - | |
Seca4g06725 | 300 | ProSitePatterns | Zinc finger C2H2 type domain signature. | 241 | 261 | IPR013087 | - | |
Seca4g06725 | 300 | Gene3D | Classic Zinc Finger | 185 | 261 | - | - | |
Seca4g06725 | 300 | MobiDBLite | consensus disorder prediction | 30 | 53 | - | - | |
Seca4g06725 | 300 | MobiDBLite | consensus disorder prediction | 89 | 126 | - | - | |
Seca4g06725 | 300 | ProSitePatterns | Zinc finger C2H2 type domain signature. | 9 | 29 | IPR013087 | - | |
Seca4g06725 | 300 | ProSitePatterns | Zinc finger C2H2 type domain signature. | 190 | 210 | IPR013087 | - | |
Seca4g06725 | 300 | ProSiteProfiles | Zinc finger C2H2 type domain profile. | 239 | 266 | IPR013087 | - | |
Seca4g06725 | 300 | ProSiteProfiles | Zinc finger C2H2 type domain profile. | 7 | 34 | IPR013087 | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Seca4g06725 | Seca-Chr4 | 138253103 | 138254005 | Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Seca4g06725 | 9 | 295 | C2H2 Transcription Factor Family | AT3G60580 | 33.223 | 2.69e-39 | 137 |
Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
---|---|---|---|---|---|---|---|
TF | C2H2 | Seca4g06725 | zf-C2H2_6 | 9.5e-11 | CL0361 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Seca4g06725 | - | - | cam:101511854 | 291.967 |