Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g06706 ATGGCGTTGGTTCCAGGCGTGTTTCATACCATTAAAAGCCTTTGTGGACATCGACAGAATTGGCGGTTGAGGGTTAAGCTGTTAAGGGTGTGGAACATGGCTTCACTTGCAAAGCCCAATGATCCGTATGCCTTGCAAATGGTGTTCATTGACGAAGAGGGTGGGAGGATAGAGGCGACAGTGCCGAAGAACGTTATGATGAAATTTTCCCAGGCTGTGGCTGAGGGGGAGGTTTGTAGGCTCTCCAATTTTGGCCTCACAGGGAATTCGGGGAAGTTTCGGGCAGCACATCACAAATTTAAGCTCGTGTTTAATGGTGGAACCAAGTTGGTACCCTGTCCTTCAATAAACATCCCAGTCTCTGGGTTCTCTTTGCTGAAAACTTCAGACATAAACAAGACTAATGGTTGTTCTGACTTCCTCTTTGATTTTATGGGTGTCCTCACGGCTGTTTCCGAGGAGATCACCATGAAGAAGCAAGGCAGGGAGACAAGGCTGATGCTGCTTCATTTAGTTGACGAAATGGGCTCCATAAGATGTGCAGTGTTCGGTGATATGGTGGACATTGTAGCAGGCTTTCTCACTATCCCAAGAGACGGGTTGCCCGTCATAATCATCCAGTTAGCCAAAGCGAATACATATAAGGGTGGCCAAGTGGGCATTCAAAATGTGATGAATGCAACTAAGTTTTACTGGAACCCTAACTTACCAGAGGCAATTGAGTTTAAGAATGGGCTTGCTGTGCATGAGGTAGAGACTGAACTTGCGATTGGTTCCATTAGCGACAGATCTCGACAGGTCTCCATGAAAGAAGAGTTCCTCACTATTTATCCTAGAAAGTCTCTAGGAAAACTGAGCGTCAGTAGGGAGGATGGTTGTGCCATTGTTCTGGGGGTGACTGATGAAGTCTTGCAGGAAGATCATTGGTGGTACATGGCTTGCACATGCATGAAAGCTTTATCCTTTGATTATGCCTCACCTTACTGTCGTGATTGCCACAAAGTTATGTTTGAAATGAACCCAAGGTTTAAGATAAAGATTCTGGTCATAGATGGTGAGGATTGGGTTTCGTTAATGATGTGGGACTCAAAATGCTATTCCTTAATGAACAAAACTTGCAGAGAAATGCTTTCTGAGATTAAGGGTGACCCAACTGAGAGCTACCCGTCTGATATATTGGATCTAATTGGGCAGGAGTTCCTCTTCCGAGTAGAGAGGAAGGAGGATGCAAAGTTTGGCAGTGAAGAATCATATATTGTCAGAAGGGTGTGTGCTGATCCAAGTGTTATTGAAGAGTTCAAAGGTGTAGTTGATGAAGAGACTCCTTTGAAGAACAAATTTGCACCTGCTTTCTCAAAATTGGGAGGCTGCGAAACAAGTGCATGTATGCTTGAGTTGACATCGCAATGCAACTCTGTTGTTACTAATACGGATGTGAGCCATAATTCATGCACCCCATCCACATATCATGCAGAGGACATTGTTGGTGAGCTTAAAAGACAAGGTGAGGCAATAGTAGATGCTCCTGCTGAGGTGAAAAAAAGAACTAGGCTCAGAAGCATCAAGCTGGAAAGAACTTAG 1581 0.4459 MALVPGVFHTIKSLCGHRQNWRLRVKLLRVWNMASLAKPNDPYALQMVFIDEEGGRIEATVPKNVMMKFSQAVAEGEVCRLSNFGLTGNSGKFRAAHHKFKLVFNGGTKLVPCPSINIPVSGFSLLKTSDINKTNGCSDFLFDFMGVLTAVSEEITMKKQGRETRLMLLHLVDEMGSIRCAVFGDMVDIVAGFLTIPRDGLPVIIIQLAKANTYKGGQVGIQNVMNATKFYWNPNLPEAIEFKNGLAVHEVETELAIGSISDRSRQVSMKEEFLTIYPRKSLGKLSVSREDGCAIVLGVTDEVLQEDHWWYMACTCMKALSFDYASPYCRDCHKVMFEMNPRFKIKILVIDGEDWVSLMMWDSKCYSLMNKTCREMLSEIKGDPTESYPSDILDLIGQEFLFRVERKEDAKFGSEESYIVRRVCADPSVIEEFKGVVDEETPLKNKFAPAFSKLGGCETSACMLELTSQCNSVVTNTDVSHNSCTPSTYHAEDIVGELKRQGEAIVDAPAEVKKRTRLRSIKLERT. 527
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g06706 526 Gene3D - 259 428 IPR012340 -
Seca4g06706 526 SUPERFAMILY Nucleic acid-binding proteins 286 411 IPR012340 -
Seca4g06706 526 Gene3D - 7 113 IPR012340 -
Seca4g06706 526 Gene3D - 116 254 IPR012340 -
Seca4g06706 526 CDD RPA1_DBD_A_like 22 109 - -
Seca4g06706 526 CDD RPA1_DBD_B_like 143 243 - -
Seca4g06706 526 SUPERFAMILY Nucleic acid-binding proteins 8 116 IPR012340 -
Seca4g06706 526 Pfam Domain of unknown function DUF223 47 113 IPR003871 -
Seca4g06706 526 SUPERFAMILY Nucleic acid-binding proteins 123 247 IPR012340 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g06706 Seca-Chr4 137984418 137986896 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g06706 1 357 Core DNA Replication Machinery Family AT5G08020 24.603 1.35e-13 71.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g06706 - - lja:Lj6g3v0884310.1 350.517