Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g06697 ATGGCCTCATCTTCCACTGCCACAACACTCTTGTTTTCCACCGATCACCATATTCCCCTCTCTCCCTCTCCAACCATTCCCAAATCCTTCACTCGCCTCTGCAAGCCCTTCCATTCAAGGGTTCCTACTTCCCTTCCTTTTCATTGCACACGACCAACCTTTCTTGTCAGGGCCACTTTCACTAGGAGCTGCCAGGTTGTGCTTAATAATGTTCAAATTATATTTACTTGTGTTTTTGGGTGTTGCCCTTTATTGTTGAATCCTATAGTGTTCTGGGACGCGAGGGTTGGGTGGGGTGATCATTTGAGTTTGGTGAAATCTTTTGTTGCTTTTAACTTTCAAGTTTATTCTTCCTTTTTCAGCTTCCGTTGGCATAGAATAGCATCTAATGCAAACAATTCCTTAGCTTTTCAGATTATAAAGTGGCGATGTCCAAAGCAAACTCTCCCTCCCAACTCTGATGCCAGTTTCCAAAAGAAAGTCCTGTATCTGGAGTCTATCGGTATTGACTCTTTCTCACTTATTGAAAATCATCCAATGCTGATCACTGCCTCACTTGCTGACATAAAATCAACTGTGGAATACATTACTTCCATGGAGTTCTCTGCAATTGAGTTTCGGCGTATGGTTGGCATGTGTCCAGAGATTCTGACTACCAAAGTCTCAGACATCATACCTGTCTTCACCTTCCTTCACCGTGAAGTTCATGTAGATGGCTCAAATATTAAGCATGTCATAAATCGTCGACCCAGGTTGCTTGTCTGCTGTGTTAATAAGCGACTTCGGCCTACCATGTACTTCCTCCAAAGTATTGGCATAGAAGAGGTAAACAAGCACACCCATCTGCTATCATGTAGTGTTGAAGAAAAGTTTATACCCAGGATTGATTACTTTGAGAATATTGGGTTTTCTCGTCGTGATGCAACTTCAATGTTTCGAAGATTTCCTCAGCTGTTTTGTTATAGTATTAAGGATAATTTGGAGCCTAAATACAATTACTTTGTGGTGGAGATGGGGAGAAAGTTGAAGGAGCTGAAAGAATTTCCACAGTATTTCTCATTTAGCTTAGAGAATAGAATTAAGCCTAGGCATAAACGCTGTGTAGAAAAGGGGGTGTGTTTTCCTCTCCCTGTGCTATTAAAGACAAGTGAAATGACATTTCGAAATAGATTAGATGTATGTGTAAATTCTTCAACACCCTTGAAAACATCTCCTCTGTGGTGTACTGGTTGTGCTGTTGATTAA 1245 0.4112 MASSSTATTLLFSTDHHIPLSPSPTIPKSFTRLCKPFHSRVPTSLPFHCTRPTFLVRATFTRSCQVVLNNVQIIFTCVFGCCPLLLNPIVFWDARVGWGDHLSLVKSFVAFNFQVYSSFFSFRWHRIASNANNSLAFQIIKWRCPKQTLPPNSDASFQKKVLYLESIGIDSFSLIENHPMLITASLADIKSTVEYITSMEFSAIEFRRMVGMCPEILTTKVSDIIPVFTFLHREVHVDGSNIKHVINRRPRLLVCCVNKRLRPTMYFLQSIGIEEVNKHTHLLSCSVEEKFIPRIDYFENIGFSRRDATSMFRRFPQLFCYSIKDNLEPKYNYFVVEMGRKLKELKEFPQYFSFSLENRIKPRHKRCVEKGVCFPLPVLLKTSEMTFRNRLDVCVNSSTPLKTSPLWCTGCAVD. 415
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g06697 414 SMART mt_12 207 238 IPR003690 GO:0003690|GO:0006355
Seca4g06697 414 SMART mt_12 243 274 IPR003690 GO:0003690|GO:0006355
Seca4g06697 414 SMART mt_12 342 373 IPR003690 GO:0003690|GO:0006355
Seca4g06697 414 SMART mt_12 172 202 IPR003690 GO:0003690|GO:0006355
Seca4g06697 414 SMART mt_12 275 304 IPR003690 GO:0003690|GO:0006355
Seca4g06697 414 SMART mt_12 309 341 IPR003690 GO:0003690|GO:0006355
Seca4g06697 414 Pfam mTERF 237 387 IPR003690 GO:0003690|GO:0006355
Seca4g06697 414 Pfam mTERF 149 235 IPR003690 GO:0003690|GO:0006355
Seca4g06697 414 FunFam Transcription termination factor MTEF1, chloroplastic 231 395 - -
Seca4g06697 414 Gene3D Transcription termination factor 3, mitochondrial 223 394 IPR038538 -
Seca4g06697 414 PANTHER CGI-12 PROTEIN-RELATED 150 392 IPR003690 GO:0003690|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g06697 Seca-Chr4 137839103 137842816 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR mTERF Seca4g06697 mTERF 1.3e-32 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g06697 K15032 - gmx:100804440 491.886