Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g06695 ATGGGAAAAGGAAGAGCACCATGCTGTGATAAGACTCAAGTGAAGAGAGGCCCTTGGAGCCCTCAAGAGGACCTTACACTCATAGCTTTCATCCAGAAACATGGCCATGAAAACTGGCGTGCTCTCCCCAAACAAGCAGAAGGGCTTCTTCGATGTGGGAAAAGTTGTCGTTTGAGATGGATCAATTATCTCAGGCCTGATGTAAAGAGAGGCAATTTTACAGCAGAGGAAGAGGAAACCATAATAAGGCTACATAAGGCCTTAGGGAACAAGTGGTCAAAGATTGCATCCCTTTTGCCTGGTAGGACTGACAATGAGATCAAGAATGTGTGGAACACACACTTAAAGAAAAGATTGGCTGTGAAAAATTCAGAGTCAAGTGCTGATGAATCCAAGCTGGAATCATCAATAACTTCCTCTTCTTCATCTTCATCTGAATCATTTGTATCAAATGAGGGACCAAATCTAGCAGAGACTACTCCTGGTAATGAATGTAATGAGCAAGCTTCCCAAGTGACAATGACAGATAAAATTGAGGAAGATTCAGAAAAACAAGTATCCAATGAACTTATTGGCATCACTGAGGATCTAAAAGAATCATCAACTTCATTATGTTCTGTTGAGTCAAATATCTTAAACTCAAGCCAGATTGTTGTCTACAAACCAGAACAACAACAATTGGCTTCTCCATTAACCTATCTAGGACCTTATGATGTTGACAATACATTAGAAGAGGTGGATAAACCAAACCATCTGGTTGAAATACCATGGGAATCAGATTATGATTTTTGGAAGTTGTTAGATAACATTGAATCTTTTCAATCAAATGAAGTCCAATTAGGGGAGTTCCCAGCCAGTCAAAGCTATAATTTTGGAGAAGAGAGTGTTCAAGATGCTGATGCAAGGAAATGGTCCCATGACTTTGAGAATGAGTTTGGAGTAGGTGAAACAAAGGAGTCAAAGAATTCTGCAGTTGAGCCAGAAATAGACCCTCAAACATTTTATTTCAATGATATGACAAGGCCAGAATCTGAATTAGACTTGGGTTATATTCAATTATGGCCCTCTTGGCCTCAAAACACTAGTATTTAA 1092 0.3938 MGKGRAPCCDKTQVKRGPWSPQEDLTLIAFIQKHGHENWRALPKQAEGLLRCGKSCRLRWINYLRPDVKRGNFTAEEEETIIRLHKALGNKWSKIASLLPGRTDNEIKNVWNTHLKKRLAVKNSESSADESKLESSITSSSSSSSESFVSNEGPNLAETTPGNECNEQASQVTMTDKIEEDSEKQVSNELIGITEDLKESSTSLCSVESNILNSSQIVVYKPEQQQLASPLTYLGPYDVDNTLEEVDKPNHLVEIPWESDYDFWKLLDNIESFQSNEVQLGEFPASQSYNFGEESVQDADARKWSHDFENEFGVGETKESKNSAVEPEIDPQTFYFNDMTRPESELDLGYIQLWPSWPQNTSI. 364
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g06695 363 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 11 64 IPR017930 -
Seca4g06695 363 CDD SANT 18 64 IPR001005 -
Seca4g06695 363 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 65 119 IPR017930 -
Seca4g06695 363 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 4 209 - -
Seca4g06695 363 SMART sant 69 117 IPR001005 -
Seca4g06695 363 SMART sant 15 66 IPR001005 -
Seca4g06695 363 Gene3D - 16 69 - -
Seca4g06695 363 FunFam Transcription factor RAX3 9 70 - -
Seca4g06695 363 CDD SANT 72 115 IPR001005 -
Seca4g06695 363 ProSiteProfiles Myb-like domain profile. 65 115 IPR001005 -
Seca4g06695 363 FunFam MYB transcription factor 71 146 - -
Seca4g06695 363 SUPERFAMILY Homeodomain-like 14 111 IPR009057 -
Seca4g06695 363 MobiDBLite consensus disorder prediction 130 173 - -
Seca4g06695 363 MobiDBLite consensus disorder prediction 121 183 - -
Seca4g06695 363 Pfam Myb-like DNA-binding domain 70 115 IPR001005 -
Seca4g06695 363 Pfam Myb-like DNA-binding domain 16 64 IPR001005 -
Seca4g06695 363 Gene3D - 72 141 - -
Seca4g06695 363 ProSiteProfiles Myb-like domain profile. 11 64 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g06695 Seca-Chr4 137806911 137809851 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g06695 1 316 MYB Transcription Factor Family AT1G79180 44.253 3.86e-78 241
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Seca4g06695 Myb_DNA-binding 4.8e-13 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g06695 K09422 - gmx:100101836 534.643